Browse Element(s) Details


Os.2524.2.S1_x_at

Description gb:NM_197379.1
DB_XREF= gi:37536117
TID=Os.2524.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2524 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Ste20-related protein kinase (OSJNBb0018B10.1), mRNA.
PROD=putative Ste20-related protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3748011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37430Os.3264.1.S1_at11/1110+19701929..19707533expressed protein
LOC_Os10g37440NANA10+19708143..19708469hypothetical protein
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein
LOC_Os10g37459NANA10+19720121..19720617hypothetical protein
LOC_Os10g37468NANA10+19721410..19725783retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37500Os.2528.1.S1_x_at7/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37500Os.2528.1.S1_at4/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2524.2.S1_x_at--452--751Chr10:19738380..19738404 (25 bp)
ATGTAGATTCTTTGGGCGACAAGTC
LOC_Os10g37480
Os.2524.2.S1_x_at--798--8191Chr10:19738578..19738602 (25 bp)
GGAAGTTCCATTGAGTAGCCTCTCC
LOC_Os10g37480
Os.2524.2.S1_x_at--773--391Chr10:19738608..19738754 (25 bp)
ATCACCACAGGCTTCACCACTAAAA
LOC_Os10g37480
Os.2524.2.S1_x_at--754--2651Chr10:19738791..19738988 (25 bp)
AAGCCAATGTCTAACAGTCATCATG
LOC_Os10g37480
Os.2524.2.S1_x_at--671--7131Chr10:19738980..19739004 (25 bp)
GTCATCATGTGAAGGAACTCTGCAA
LOC_Os10g37480
Os.2524.2.S1_x_at--998--5191Chr10:19739001..19739025 (25 bp)
GCAATAGCTCCGTATCATCATCAAT
LOC_Os10g37480
Os.2524.2.S1_x_at--108--9611Chr10:19739018..19739042 (25 bp)
TCATCAATTTTAATTCCCCACCTTG
LOC_Os10g37480
Os.2524.2.S1_x_at--506--9211Chr10:19739032..19739056 (25 bp)
TCCCCACCTTGAGAACCTTGTGAAA
LOC_Os10g37480
Os.2524.2.S1_x_at--1013--2191Chr10:19739056..19739300 (25 bp)
ACAAACTATGTTTCAGCAGGATCTG
LOC_Os10g37480
Os.2524.2.S1_x_at--1052--6071Chr10:19739472..19739496 (25 bp)
GAGTATTGTCTGGAATATCCCCACA
LOC_Os10g37480
Os.2524.2.S1_x_at--304--10131Chr10:19739487..19739511 (25 bp)
TATCCCCACAACTCCGAAATACGGA
LOC_Os10g37480
Target Sequence 
ATGTAGATTCTTTGGGCGACAAGTCTAAACGTAACGTGGTGGAGATTAAAGGACGGTTTTCCGTGACATCTGAGAATGTT
GATCTTGCTAAGGTTCAGGAAGTTCCATTGAGTAGCCTCTCCCGCAAATCACCACAGGCTTCACCACTAAAAAAATCTGC
TAGCGTTGGTGATTGGTTGGTGAACACTAAGCCAATGTCTAACAGTCATCATGTGAAGGAACTCTGCAATAGCTCCGTAT
CATCATCAATTTTAATTCCCCACCTTGAGAACCTTGTGAAACAAACTATGTTTCAGCAGGATCTGATAATGAATGTGTTA
AGTAGCTTGCAACAGAATGAGAAAGTTGATGGAGTATTGTCTGGAATATCCCCACAACTCCGAAATACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2524.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis