Browse Element(s) Details


Os.3264.1.S1_at

Description gb:AK099732.1
DB_XREF= gi:32984941
TID=Os.3264.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0076F20.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089P16, full insert sequence.
FL= gb:AK099732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3743011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37350OsAffx.6892.1.S1_x_at11/1110+19681835..19682277expressed protein
LOC_Os10g37370Os.2235.3.S1_x_at11/1110+19684581..19686956retrotransposon protein, putative, unclassified
LOC_Os10g37400OsAffx.6894.1.S1_x_at11/1110+19693070..19693480hypothetical protein
LOC_Os10g37410Os.23199.1.S1_at11/1110+19695299..19698718RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os10g37420Os.3266.1.S1_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.3266.1.S1_x_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.57453.1.S1_x_at9/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.25385.1.S1_at8/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37430Os.3264.1.S1_at11/1110+19701929..19707533expressed protein
LOC_Os10g37440NANA10+19708143..19708469hypothetical protein
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein
LOC_Os10g37459NANA10+19720121..19720617hypothetical protein
LOC_Os10g37468NANA10+19721410..19725783retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3264.1.S1_at--283--51Chr10:19706762..19706786 (25 bp)
ATTGTTTCTGTGTCAGCATGCGCTG
LOC_Os10g37430
Os.3264.1.S1_at--468--4971Chr10:19706817..19706841 (25 bp)
GCATCGATACTATTCATGGCCCTAG
LOC_Os10g37430
Os.3264.1.S1_at--832--871Chr10:19706832..19707075 (25 bp)
ATGGCCCTAGATTCTTGGTTGCTGA
LOC_Os10g37430
Os.3264.1.S1_at--185--6611Chr10:19707096..19707120 (25 bp)
GTTGGCTAGACGCTATACGCCTAGT
LOC_Os10g37430
Os.3264.1.S1_at--389--4171Chr10:19707113..19707137 (25 bp)
CGCCTAGTCTACACCATATTTGCAA
LOC_Os10g37430
Os.3264.1.S1_at--167--4751Chr10:19707174..19707198 (25 bp)
GCTGATGGCTCGCTGCTAGTGAAAA
LOC_Os10g37430
Os.3264.1.S1_at--192--3131Chr10:19707336..19707360 (25 bp)
CAATTTTCCTTTGTACTGTGGCGTT
LOC_Os10g37430
Os.3264.1.S1_at--973--8471Chr10:19707354..19707378 (25 bp)
TGGCGTTGTGTCGTCATGGTACATA
LOC_Os10g37430
Os.3264.1.S1_at--696--7071Chr10:19707404..19707428 (25 bp)
GTAATATCCTCTCTAGCCTGTGAAT
LOC_Os10g37430
Os.3264.1.S1_at--487--6631Chr10:19707460..19707484 (25 bp)
GTTGTGTGAACTGCTGTCCTATCTC
LOC_Os10g37430
Os.3264.1.S1_at--839--2971Chr10:19707504..19707528 (25 bp)
AATGTTTCCCCTATCTGTTTTTCAG
LOC_Os10g37430
Target Sequence 
ATTGTTTCTGTGTCAGCATGCGCTGATCTAACCCTGCCACCCGGTGCTGGCCTTCGCATCGATACTATTCATGGCCCTAG
ATTCTTGGTTGCTGATAACTGGGAGACCATTGACAGTTGGCTAGACGCTATACGCCTAGTCTACACCATATTTGCAAGAG
GGAGGAGTGATGTCCTTGCTGGGATTATTACTGGCTGATGGCTCGCTGCTAGTGAAAAACTGCCNAACAAGTATAGGCCA
AGAGACTGTAGGAGTATGTCCCGGAATCAGATAGAAGTATCATAGAACTCATGGTTTTAGTAGGCGTAAGAGCAGATGTT
ATTTGTAACCCATTTATGGACTGGTAGGTCATAGGCCAATTTTCCTTTGTACTGTGGCGTTGTGTCGTCATGGTACATAT
GATGTGATATAAGAAATAAAAACCGTAATATCCTCTCTAGCCTGTGAATAAAGATGCAACGGCTTGTGGCAGGCGAGTAG
GTTGTGTGAACTGCTGTCCTATCTCCCTCTCAAAGAAGGAATAAAATGTTTCCCCTATCTGTTTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis