Browse Element(s) Details


OsAffx.20195.1.S1_at

Description gb:NM_197375.1
DB_XREF= gi:37536109
TID=OsAffx.20195.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0076F20.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3745011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37400OsAffx.6894.1.S1_x_at11/1110+19693070..19693480hypothetical protein
LOC_Os10g37410Os.23199.1.S1_at11/1110+19695299..19698718RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os10g37420Os.3266.1.S1_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.3266.1.S1_x_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.57453.1.S1_x_at9/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.25385.1.S1_at8/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37430Os.3264.1.S1_at11/1110+19701929..19707533expressed protein
LOC_Os10g37440NANA10+19708143..19708469hypothetical protein
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein
LOC_Os10g37459NANA10+19720121..19720617hypothetical protein
LOC_Os10g37468NANA10+19721410..19725783retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20195.1.S1_at--438--2891Chr10:19715703..19715727 (25 bp)
AAGGGTTCGCCGTTCATGCACAAGA
LOC_Os10g37450
OsAffx.20195.1.S1_at--205--9031Chr10:19715687..19715711 (25 bp)
TGCACAAGACTTCCCTTTGATCAGA
LOC_Os10g37450
OsAffx.20195.1.S1_at--643--6191Chr10:19715664..19715688 (25 bp)
GAGGAAACTGTGTCTACTATGCAAG
LOC_Os10g37450
OsAffx.20195.1.S1_at--201--8711Chr10:19715616..19715640 (25 bp)
TGTCCTGCAGAGAATTCCATGTCCT
LOC_Os10g37450
OsAffx.20195.1.S1_at--985--3151Chr10:19715604..19715628 (25 bp)
AATTCCATGTCCTCCGCAATATCAT
LOC_Os10g37450
OsAffx.20195.1.S1_at--853--931Chr10:19715571..19715595 (25 bp)
AGGAATTAGCAGCTGCTGGCCCTAT
LOC_Os10g37450
OsAffx.20195.1.S1_at--621--8411Chr10:19715554..19715578 (25 bp)
GGCCCTATTCTTGGTTGTGTCTCAA
LOC_Os10g37450
OsAffx.20195.1.S1_at--723--7911Chr10:19715542..19715566 (25 bp)
GGTTGTGTCTCAAGAGGCCCTTCCT
LOC_Os10g37450
OsAffx.20195.1.S1_at--28--8171Chr10:19715436..19715460 (25 bp)
GGAAAACTGAGCTTCACCAACTTCT
LOC_Os10g37450
OsAffx.20195.1.S1_at--284--10591Chr10:19715415..19715439 (25 bp)
TTCTCTCCTCTCAGATAAACTCATA
LOC_Os10g37450
OsAffx.20195.1.S1_at--204--2071Chr10:19715381..19715405 (25 bp)
ACTTGATTTTGTGTCGTGTGATACT
LOC_Os10g37450
Target Sequence 
AAGGGTTCGCCGTTCATGCACAAGACTTCCCTTTGATCAGAGGAAACTGTGTCTACTATGCAAGGAACGATATTTTGTAC
AGTCTGATGTCCTGCAGAGAATTCCATGTCCTCCGCAATATCATGAGGGGGAAGGAATTAGCAGCTGCTGGCCCTATTCT
TGGTTGTGTCTCAAGAGGCCCTTCCTCCCTTCCTCAAGGAGTAGTTAGCAGTGATGAAGACTATTTTTTAAATAATTCTA
TTGCTTCAACAGTATTTACAGAAAAAAGGAAAACTGAGCTTCACCAACTTCTCTCCTCTCAGATAAACTCATATGTGGGT
ACACTTGATTTTGTGTCGTGTGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis