Browse Element(s) Details


Os.57453.1.S1_x_at

Description gb:D10954.1
DB_XREF= gi:218092
TID=Os.57453.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57453 (NCBI UniGene Cluster)
UG_TITLE=MRNA for cytochrome b5
DEF=Oryza sativa mRNA for cytochrome b5.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g374209/11Cytochrome b5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37340Os.4666.1.S1_at11/1110+19671456..19674934Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g37350OsAffx.6892.1.S1_x_at11/1110+19681835..19682277expressed protein
LOC_Os10g37370Os.2235.3.S1_x_at11/1110+19684581..19686956retrotransposon protein, putative, unclassified
LOC_Os10g37400OsAffx.6894.1.S1_x_at11/1110+19693070..19693480hypothetical protein
LOC_Os10g37410Os.23199.1.S1_at11/1110+19695299..19698718RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os10g37420Os.3266.1.S1_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.3266.1.S1_x_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.57453.1.S1_x_at9/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.25385.1.S1_at8/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37430Os.3264.1.S1_at11/1110+19701929..19707533expressed protein
LOC_Os10g37440NANA10+19708143..19708469hypothetical protein
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein
LOC_Os10g37459NANA10+19720121..19720617hypothetical protein
LOC_Os10g37468NANA10+19721410..19725783retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57453.1.S1_x_at--889--7671Chr10:19701244..19701268 (25 bp)
GGGTTCGAGGAGGTGGCCGGCCACA
LOC_Os10g37420
Os.57453.1.S1_x_at--1120--1051NONE
AGGGATTGCTGGCTCATCATCGCCG
NONE
Os.57453.1.S1_x_at--981--3551NONE
CATCATCGCCGGGAAGGTATATGAT
NONE
Os.57453.1.S1_x_at--824--2051Chr10:19699646..19699670 (25 bp)
ACTTCTTTTATGGATGAGCACCCTG
LOC_Os10g37420
Os.57453.1.S1_x_at--531--10371Chr10:19699641..19699665 (25 bp)
TTTTATGGATGAGCACCCTGGTGGC
LOC_Os10g37420
Os.57453.1.S1_x_at--394--1811Chr10:19699627..19699651 (25 bp)
ACCCTGGTGGCGATGAAGTGTTGCT
LOC_Os10g37420
Os.57453.1.S1_x_at--333--5331Chr10:19699615..19699637 (23 bp)
GAAGTGTTGCTAGCAGTAACTGGCA
LOC_Os10g37420
Os.57453.1.S1_x_at--469--8511Chr10:19699482..19699505 (24 bp)
TGGCAAAGACGCAACCAATGATTTT
LOC_Os10g37420
Os.57453.1.S1_x_at--848--6331Chr10:19699394..19699418 (25 bp)
GATGCTTCAACCATCCCAGTAAAGC
LOC_Os10g37420
Os.57453.1.S1_x_at--643--1171Chr10:19699377..19699401 (25 bp)
AGTAAAGCGTACTCATGTCACTCCC
LOC_Os10g37420
Os.57453.1.S1_x_at--644--7011Chr10:19699370..19699393 (24 bp)
GTACTCATGTCACTCCCCAGCAAGG
LOC_Os10g37420
Target Sequence 
GGGTTCGAGGAGGTGGCCGGCCACAACGTCNCCAGGGATTGCTGGCTCATCATCGCCGGGAAGGTATATGATGNNACTTC
TTTTATGGATGAGCACCCTGGTGGCGATGAAGTGTTGCTAGCAGTAACTGGCAAAGACGCAACCAATGATTTTNAAGACA
TTNGGCCACAGTGAATCAGCANGGGAGATNATGGAGAAGTATCTCATTGGGGTAGATTNGATGCTTCAACCATCCCAGTA
AAGCGTACTCATGTCACTCCCCAGCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57453.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis