Browse Element(s) Details


Os.4666.1.S1_at

Description gb:AK100465.1
DB_XREF= gi:32985674
TID=Os.4666.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.4666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gamma-lyase (OSJNBa0076F20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092C09, full insert sequence.
FL= gb:AK100465.1 gb:AK105942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3734011/11Cys/Met metabolism PLP-dependent enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37320OsAffx.7967.1.S1_at6/1110+19664699..19665102NA
LOC_Os10g37330OsAffx.30701.1.S1_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37330Os.46641.1.S1_x_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37340Os.4666.1.S1_at11/1110+19671456..19674934Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g37350OsAffx.6892.1.S1_x_at11/1110+19681835..19682277expressed protein
LOC_Os10g37370Os.2235.3.S1_x_at11/1110+19684581..19686956retrotransposon protein, putative, unclassified
LOC_Os10g37400OsAffx.6894.1.S1_x_at11/1110+19693070..19693480hypothetical protein
LOC_Os10g37410Os.23199.1.S1_at11/1110+19695299..19698718RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os10g37420Os.3266.1.S1_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.3266.1.S1_x_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.57453.1.S1_x_at9/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.25385.1.S1_at8/1110+19699021..19701533Cytochrome b5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0009086biological_processmethionine biosynthesis
GO:0019279biological_processmethionine biosynthesis from L-homoserine via cystathione
GO:0009507cellular_componentchloroplast
GO:0003824molecular_functioncatalytic activity
GO:0003962molecular_functioncystathionine gamma-synthase activity
GO:0004121molecular_functioncystathionine beta-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4666.1.S1_at--547--9491Chr10:19672062..19672086 (25 bp)
TCTGCGTCGACATGGGCACCGAGGA
LOC_Os10g37340
Os.4666.1.S1_at--34--9911Chr10:19671967..19671991 (25 bp)
TACTACGAGACCCTCATGTCGTGCT
LOC_Os10g37340
Os.4666.1.S1_at--177--771Chr10:19671868..19671892 (25 bp)
ATGTCCGTCGGGTACAACGGCACGC
LOC_Os10g37340
Os.4666.1.S1_at--863--4151Chr10:19671764..19671788 (25 bp)
CGCCGCCAAGTACTGCAAGGTGTGA
LOC_Os10g37340
Os.4666.1.S1_at--487--5871Chr10:19671733..19671757 (25 bp)
GAGCCCCGCCATTGATGGTGCGCAT
LOC_Os10g37340
Os.4666.1.S1_at--860--9151Chr10:19671715..19671739 (25 bp)
TGCGCATTAGCGACGATCCGATTTG
LOC_Os10g37340
Os.4666.1.S1_at--353--551Chr10:19671700..19671724 (25 bp)
ATCCGATTTGTTGTATCTGCCCCGT
LOC_Os10g37340
Os.4666.1.S1_at--612--4531Chr10:19671682..19671706 (25 bp)
GCCCCGTGTTGCTGGTTTGTATATA
LOC_Os10g37340
Os.4666.1.S1_at--1004--1171Chr10:19671600..19671624 (25 bp)
AGTACTATCTGATCGCTCTGGTTCA
LOC_Os10g37340
Os.4666.1.S1_at--36--1251Chr10:19671572..19671596 (25 bp)
AGTTGAATGGCACAGCTAAGCTGCT
LOC_Os10g37340
Os.4666.1.S1_at--871--3731Chr10:19671557..19671581 (25 bp)
CTAAGCTGCTTGTTCTCTGGGAAAC
LOC_Os10g37340
Target Sequence 
TCTGCGTCGACATGGGCACCGAGGACCGCGCCAACCGCCTCATGCACCACCTCCAGAACACCACCCGCTTCGGCCTCATG
GCCGTCAGCCTCGGCTACTACGAGACCCTCATGTCGTGCTCCGGCAGCAGCACCAGCAGCGAGATGCCGCCCGAGGACCG
CGCTCGCGCCGGCATCTCCCCCGGCCTCGTCCGCATGTCCGTCGGGTACAACGGCACGCTCGAGCAGCGGTGGGCGCAGT
TCGAGCGCGCGCTCTCGCTCATGCAGCAGCAGCAGCAGCAGCATCCCGACCGCGACGCCGCCGCCAAGTACTGCAAGGTG
TGACGTCACGAGCCCCGCCATTGATGGTGCGCATTAGCGACGATCCGATTTGTTGTATCTGCCCCGTGTTGCTGGTTTGT
ATATATAGTTTATTATGTAATTACTAGTGCTACCTATAAGTAAGGTTTAAGCTGTTAAACTGAGTACTATCTGATCGCTC
TGGTTCAGATAGTTGAATGGCACAGCTAAGCTGCTTGTTCTCTGGGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis