Browse Element(s) Details


OsAffx.30701.1.S1_at

Description tigr:9638.m03337
TID=OsAffx.30701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative aldoketo reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3733011/11aldo/keto reductase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37320OsAffx.7967.1.S1_at6/1110+19664699..19665102NA
LOC_Os10g37330OsAffx.30701.1.S1_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37330Os.46641.1.S1_x_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37340Os.4666.1.S1_at11/1110+19671456..19674934Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g37350OsAffx.6892.1.S1_x_at11/1110+19681835..19682277expressed protein
LOC_Os10g37370Os.2235.3.S1_x_at11/1110+19684581..19686956retrotransposon protein, putative, unclassified
LOC_Os10g37400OsAffx.6894.1.S1_x_at11/1110+19693070..19693480hypothetical protein
LOC_Os10g37410Os.23199.1.S1_at11/1110+19695299..19698718RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30701.1.S1_at--336--7571Chr10:19671703..19671727 (25 bp)
GGGCAGATACAACAAATCGGATCGT
LOC_Os10g37330
OsAffx.30701.1.S1_at--510--2271Chr10:19671716..19671740 (25 bp)
AAATCGGATCGTCGCTAATGCGCAC
LOC_Os10g37330
OsAffx.30701.1.S1_at--1126--7191Chr10:19671726..19671750 (25 bp)
GTCGCTAATGCGCACCATCAATGGC
LOC_Os10g37330
OsAffx.30701.1.S1_at--244--7591Chr10:19671752..19671776 (25 bp)
GGGCTCGTGACGTCACACCTTGCAG
LOC_Os10g37330
OsAffx.30701.1.S1_at--722--7091Chr10:19671763..19671787 (25 bp)
GTCACACCTTGCAGTACTTGGCGGC
LOC_Os10g37330
OsAffx.30701.1.S1_at--470--3991Chr10:19671869..19671893 (25 bp)
CGTGCCGTTGTACCCGACGGACATG
LOC_Os10g37330
OsAffx.30701.1.S1_at--796--9951Chr10:19671879..19671903 (25 bp)
TACCCGACGGACATGCGGACGAGGC
LOC_Os10g37330
OsAffx.30701.1.S1_at--172--3831Chr10:19671960..19671984 (25 bp)
CTGCCGGAGCACGACATGAGGGTCT
LOC_Os10g37330
OsAffx.30701.1.S1_at--492--5651Chr10:19671972..19671996 (25 bp)
GACATGAGGGTCTCGTAGTAGCCGA
LOC_Os10g37330
OsAffx.30701.1.S1_at--371--4031Chr10:19671985..19672009 (25 bp)
CGTAGTAGCCGAGGCTGACGGCCAT
LOC_Os10g37330
OsAffx.30701.1.S1_at--973--7771Chr10:19672067..19672091 (25 bp)
GGTGCCCATGTCGACGCAGAGCATG
LOC_Os10g37330
Target Sequence 
GGGCAGATACAACAAATCGGATCGTCGCTAATGCGCACCATCAATGGCGGGGCTCGTGACGTCACACCTTGCAGTACTTG
GCGGCGGCGTCGCGGTCGGGATGCTGCTGCTGCTGCTGCTGCATGAGCGAGAGCGCGCGCTCGAACTGCGCCCACCGCTG
CTCGAGCGTGCCGTTGTACCCGACGGACATGCGGACGAGGCCGGGGGAGATGCCGGCGCGAGCGCGGTCCTCGGGCGGCA
TCTCGCTGCTGGTGCTGCTGCCGGAGCACGACATGAGGGTCTCGTAGTAGCCGAGGCTGACGGCCATGAGGCCGAAGCGG
GTGGTGTTCTGGAGGTGGTGCATGAGGCGGTTGGCGCGGTCCTCGGTGCCCATGTCGACGCAGAGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis