Browse Element(s) Details


OsAffx.7967.1.S1_at

Description tigr:9638.m03336
TID=OsAffx.7967.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g373206/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37280Os.9843.1.S1_at11/1110+19633110..19641747sphingosine kinase, putative, expressed
LOC_Os10g37290Os.17522.1.S1_s_at11/1110+19642147..19642977expressed protein
LOC_Os10g37320OsAffx.7967.1.S1_at6/1110+19664699..19665102NA
LOC_Os10g37330OsAffx.30701.1.S1_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37330Os.46641.1.S1_x_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37340Os.4666.1.S1_at11/1110+19671456..19674934Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g37350OsAffx.6892.1.S1_x_at11/1110+19681835..19682277expressed protein
LOC_Os10g37370Os.2235.3.S1_x_at11/1110+19684581..19686956retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7967.1.S1_at--311--4531Chr10:19664662..19664686 (25 bp)
GCCGCCTGCACGGAGATCAATGTGG
NONE
OsAffx.7967.1.S1_at--433--4471Chr10:19664665..19664689 (25 bp)
GCCTGCACGGAGATCAATGTGGTGT
NONE
OsAffx.7967.1.S1_at--873--4271Chr10:19664666..19664690 (25 bp)
CCTGCACGGAGATCAATGTGGTGTG
NONE
OsAffx.7967.1.S1_at--674--6031Chr10:19664696..19664720 (25 bp)
GAGATGACGACGGTCCTCTGCGCCG
NONE
OsAffx.7967.1.S1_at--1001--1292Chr10:19664697..19664721 (25 bp)
AGATGACGACGGTCCTCTGCGCCGG
NONE
OsAffx.7967.1.S1_at--1065--1911Chr10:19664705..19664729 (25 bp)
ACGGTCCTCTGCGCCGGTGGAAATG
LOC_Os10g37320
OsAffx.7967.1.S1_at--1058--7011Chr10:19664736..19664760 (25 bp)
GTAAAAGTGGGCAGTACGTCGCCAC
LOC_Os10g37320
OsAffx.7967.1.S1_at--754--3971Chr10:19664761..19664785 (25 bp)
CGGTGGCACCAACCGGTCAGTAATG
LOC_Os10g37320
OsAffx.7967.1.S1_at--809--3231Chr10:19664770..19664794 (25 bp)
CAACCGGTCAGTAATGGGGAGGCCA
LOC_Os10g37320
OsAffx.7967.1.S1_at--767--7631Chr10:19664786..19664810 (25 bp)
GGGAGGCCATTCAGCCCGATTCCTC
LOC_Os10g37320
OsAffx.7967.1.S1_at--1129--6571Chr10:19664803..19664827 (25 bp)
GATTCCTCGTCCTGTTCACACACAG
LOC_Os10g37320
Target Sequence 
GCCGCCTGCACGGAGATCAATGTGGTGTGGAGGCGAGATGACGACGGTCCTCTGCGCCGGTGGAAATGGGGGTAGTAAAA
GTGGGCAGTACGTCGCCACCGGTGGCACCAACCGGTCAGTAATGGGGAGGCCATTCAGCCCGATTCCTCGTCCTGTTCAC
ACACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis