Browse Element(s) Details


OsAffx.6894.1.S1_x_at

Description tigr:9638.m03344
TID=OsAffx.6894.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3740011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37330OsAffx.30701.1.S1_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37330Os.46641.1.S1_x_at11/1110+19668105..19672293aldo/keto reductase family protein, putative, expressed
LOC_Os10g37340Os.4666.1.S1_at11/1110+19671456..19674934Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g37350OsAffx.6892.1.S1_x_at11/1110+19681835..19682277expressed protein
LOC_Os10g37370Os.2235.3.S1_x_at11/1110+19684581..19686956retrotransposon protein, putative, unclassified
LOC_Os10g37400OsAffx.6894.1.S1_x_at11/1110+19693070..19693480hypothetical protein
LOC_Os10g37410Os.23199.1.S1_at11/1110+19695299..19698718RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os10g37420Os.3266.1.S1_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.3266.1.S1_x_at11/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.57453.1.S1_x_at9/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37420Os.25385.1.S1_at8/1110+19699021..19701533Cytochrome b5, putative, expressed
LOC_Os10g37430Os.3264.1.S1_at11/1110+19701929..19707533expressed protein
LOC_Os10g37440NANA10+19708143..19708469hypothetical protein
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6894.1.S1_x_at--531--1471Chr10:19693389..19693413 (25 bp)
AGAAGGCGCCGTACGAGCACTACTT
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--679--1871Chr10:19693377..19693401 (25 bp)
ACGAGCACTACTTCCGCGGCACGGG
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--868--1831Chr10:19693351..19693375 (25 bp)
ACGCGGGTGCGGTACGACGTCGAGG
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--571--991Chr10:19693303..19693327 (25 bp)
AGGATGAAGCGGATGACCGGCGTGC
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--426--4711Chr10:19693272..19693296 (25 bp)
GCAGGCTCATGCTCTGGGTCCCCAT
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--1068--7691Chr10:19693257..19693281 (25 bp)
GGGTCCCCATCGTCGAGATGAGCCT
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--74--1312Chr12:19310563..19311020 (25 bp)
AGATGAGCCTCGACGGCGCCGACCG
NONE
OsAffx.6894.1.S1_x_at--1102--5811Chr10:19693222..19693246 (25 bp)
GACCGCGTCTACTTCAAGTCCAACG
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--663--2051Chr10:19693212..19693236 (25 bp)
ACTTCAAGTCCAACGTCGGCATCGG
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--992--4131Chr10:19693142..19693166 (25 bp)
CGCCGCCTTCTTAAGGAAGCCGACG
LOC_Os10g37400
OsAffx.6894.1.S1_x_at--244--4451Chr10:19693138..19693162 (25 bp)
GCCTTCTTAAGGAAGCCGACGCCGC
LOC_Os10g37400
Target Sequence 
AGAAGGCGCCGTACGAGCACTACTTCCGCGGCACGGGGACGCGGGTGCGGTACGACGTCGAGGTGACGGCGTTCGTGGAG
GAAGGGAGGATGAAGCGGATGACCGGCGTGCGGCGAGGCAGGCTCATGCTCTGGGTCCCCATCGTCGAGATGAGCCTCGA
CGGCGCCGACCGCGTCTACTTCAAGTCCAACGTCGGCATCGGCCGCTCCTTCCCGGCCTCCGCCTTCGCCGACGAGACCG
CCGCCGCCGCCGCCTTCTTAAGGAAGCCGACGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6894.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis