Browse Element(s) Details


Os.2524.1.S1_at

Description gb:CB631697
DB_XREF= gi:29626686
DB_XREF=OSIIEb09G06.r
CLONE=OSIIEb09G06
TID=Os.2524.1
CNT=15
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.2524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Ste20-related protein kinase (OSJNBb0018B10.1), mRNA
FL= gb:AK100288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3748011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37430Os.3264.1.S1_at11/1110+19701929..19707533expressed protein
LOC_Os10g37440NANA10+19708143..19708469hypothetical protein
LOC_Os10g37450OsAffx.20195.1.S1_at11/1110+19715264..19716565hypothetical protein
LOC_Os10g37459NANA10+19720121..19720617hypothetical protein
LOC_Os10g37468NANA10+19721410..19725783retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37500Os.2528.1.S1_x_at7/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37500Os.2528.1.S1_at4/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2524.1.S1_at--401--9811Chr10:19740355..19740379 (25 bp)
TAACGCCAGACATTCGACTGATATG
LOC_Os10g37480
Os.2524.1.S1_at--812--8491Chr10:19740392..19740416 (25 bp)
TGGCTTGCATCGATTGCTTCGCTAA
LOC_Os10g37480
Os.2524.1.S1_at--756--6591Chr10:19740403..19740427 (25 bp)
GATTGCTTCGCTAACTGCCAGTGAA
LOC_Os10g37480
Os.2524.1.S1_at--535--6951Chr10:19740482..19740506 (25 bp)
GTAGAATTCGCAGAAGCCAGCTCAT
LOC_Os10g37480
Os.2524.1.S1_at--544--4411Chr10:19740497..19740521 (25 bp)
GCCAGCTCATGCAGGTGCTCTAAGA
LOC_Os10g37480
Os.2524.1.S1_at--602--5311Chr10:19740535..19740559 (25 bp)
GAAGGTTGACATGCCCTGGCCTGGT
LOC_Os10g37480
Os.2524.1.S1_at--136--8431Chr10:19740552..19740576 (25 bp)
GGCCTGGTGCCATCAGTGTGTATAT
LOC_Os10g37480
Os.2524.1.S1_at--891--7411Chr10:19740649..19740673 (25 bp)
GTGTATTTTACAGCTTCGGCCACAA
LOC_Os10g37480
Os.2524.1.S1_at--739--1551Chr10:19740660..19740684 (25 bp)
AGCTTCGGCCACAACTATCATTGAA
LOC_Os10g37480
Os.2524.1.S1_at--544--10411Chr10:19740695..19740719 (25 bp)
TTATGTAGATCCTAGGGCGACCCGT
LOC_Os10g37480
Os.2524.1.S1_at--488--5811Chr10:19740713..19740737 (25 bp)
GACCCGTTGGTTCTCATAGCAGAAA
LOC_Os10g37480
Target Sequence 
TAACGCCAGACATTCGACTGATATGANTTGCCTGCCCTGGCTTGCATCGATTGCTTCGCTAACTGCCAGTGAAGATGAGT
TTAACAAGAGAACCTCATCAACCTGCACTTCCTGAATCATAAAATTGGTAGAATTCGCAGAAGCCAGCTCATGCAGGTGC
TCTAAGAAAATTCGTTCTGGGAAGGTTGACATGCCCTGGCCTGGTGCCATCAGTGTGTATATTAGTTTTTTGTTAAGCTT
TCTTTTCCATTTATTTTTTCAATGGTGTTTTGGTGGTCATGAAATTATGGTGCCGTGTATTTTACAGCTTCGGCCACAAC
TATCATTGAAATAGCTGTGATTATGTAGATCCTAGGGCGACCCGTTGGTTCTCATAGCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis