Browse Element(s) Details


Os.2506.1.S1_at

Description gb:AK061924.1
DB_XREF= gi:32971942
TID=Os.2506.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transporter (OSJNBb0018B10.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B12, full insert sequence.
FL= gb:AK103488.1 gb:AK061924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3752011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37480Os.2524.2.S1_x_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37480Os.2524.1.S1_at11/1110+19731246..19740880Protein kinase domain containing protein, expressed
LOC_Os10g37490OsAffx.18556.1.S1_at11/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37490OsAffx.18556.2.S1_x_at10/1110+19741137..19744510DNA excision repair protein ERCC-1, putative, expressed
LOC_Os10g37500Os.2528.1.S1_x_at7/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37500Os.2528.1.S1_at4/1110+19752376..19753974ATPase, AAA family protein, expressed
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed
LOC_Os10g37560Os.41695.15.S1_s_at11/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.2.S1_x_at10/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.3.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.5.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37570OsAffx.20193.1.S1_at11/1110+19779297..19780514F-box domain containing protein
LOC_Os10g37580OsAffx.30703.1.S1_at11/1110+19781388..19782638hypothetical protein
LOC_Os10g37590OsAffx.20192.1.S1_at11/1110+19783639..19784709hypothetical protein
LOC_Os10g37590OsAffx.15567.2.S1_s_at4/1110+19783639..19784709hypothetical protein
LOC_Os10g37600NANA10+19785292..19786407hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2506.1.S1_at--921--8271Chr10:19764735..19764759 (25 bp)
GGCATGTGTGCTATTTTCCTTTTCA
LOC_Os10g37520
Os.2506.1.S1_at--1028--1471Chr10:19764764..19764788 (25 bp)
AGCAATCTTGCAGAGGCGGCTGATG
LOC_Os10g37520
Os.2506.1.S1_at--152--831Chr10:19764786..19764810 (25 bp)
ATGGTTGTCTCTGATCTCCACAGAT
LOC_Os10g37520
Os.2506.1.S1_at--886--5351Chr10:19764940..19764964 (25 bp)
GAAGATGAGCCGTTAAACCCATAGA
LOC_Os10g37520
Os.2506.1.S1_at--385--5511Chr10:19764994..19765018 (25 bp)
GAAAATTGCCATCCAACTTGAGCCG
LOC_Os10g37520
Os.2506.1.S1_at--37--4531Chr10:19765015..19765039 (25 bp)
GCCGCTTTCCACTGGCTGCTGAATA
LOC_Os10g37520
Os.2506.1.S1_at--934--7851Chr10:19765097..19765121 (25 bp)
GGTAGTCTCAATTCATTTTTGTCAG
LOC_Os10g37520
Os.2506.1.S1_at--735--7051Chr10:19765166..19765190 (25 bp)
GTAACGCCTTGCATAGGTCTCCTTC
LOC_Os10g37520
Os.2506.1.S1_at--89--111Chr10:19765193..19765217 (25 bp)
ATTCTTTTCCACTTTCTTCTCGAGT
LOC_Os10g37520
Os.2506.1.S1_at--668--6291Chr10:19765220..19765244 (25 bp)
GATGATCGATGCTTAACCATTTTGG
LOC_Os10g37520
Os.2506.1.S1_at--71--6531Chr10:19765280..19765304 (25 bp)
GATTGTTCCTAATGTTTCGTATACG
LOC_Os10g37520
Target Sequence 
GGCATGTGTGCTATTTTCCTTTTCATGGCAGCAATCTTGCAGAGGCGGCTGATGGTTGTCTCTGATCTCCACAGATCAAC
AAAAGCTGTAGAGATGACTGGGGAAGATGAGCCGTTAAACCCATAGAAGACAAGACAATAGATGTGAATTGGACATGAAA
ATTGCCATCCAACTTGAGCCGCTTTCCACTGGCTGCTGAATAAGCTGGAAAATAGCAGGCTGGAATGAAACGTACTAGTA
GTAGTTTAGTTTGCTTGTAGGTAGTCTCAATTCATTTTTGTCAGGAGAGAGTACACGGTCCAGAAAATATTGAGCTACAG
GCGGCATNGTAACGCCTTGCATAGGTCTCCTTCCCATTCTTTTCCACTTTCTTCTCGAGTGTGATGATCGATGCTTAACC
ATTTTGGATGCAAAACANATTGAGTAGTGTAACAAATTTGGTGATTGTTCCTAATGTTTCGTATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis