Browse Element(s) Details


OsAffx.30703.1.S1_at

Description gb:NM_197388.1
DB_XREF= gi:37536135
TID=OsAffx.30703.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0018B10.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3758011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37510Os.12847.1.S1_at11/1110+19757663..19758370expressed protein
LOC_Os10g37520Os.2506.1.S1_at11/1110+19762051..19765321Major Facilitator Superfamily protein, expressed
LOC_Os10g37530Os.46850.1.S1_at11/1110+19765911..19766854Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os10g37540Os.46846.1.S1_at11/1110+19768702..19770368F-box domain containing protein, expressed
LOC_Os10g37560Os.41695.15.S1_s_at11/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.2.S1_x_at10/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.3.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37560Os.41695.5.S1_x_at9/1110+19774762..19777504expressed protein
LOC_Os10g37570OsAffx.20193.1.S1_at11/1110+19779297..19780514F-box domain containing protein
LOC_Os10g37580OsAffx.30703.1.S1_at11/1110+19781388..19782638hypothetical protein
LOC_Os10g37590OsAffx.20192.1.S1_at11/1110+19783639..19784709hypothetical protein
LOC_Os10g37590OsAffx.15567.2.S1_s_at4/1110+19783639..19784709hypothetical protein
LOC_Os10g37600NANA10+19785292..19786407hypothetical protein
LOC_Os10g37604NANA10+19794855..19795967hypothetical protein
LOC_Os10g37610NANA10+19796726..19799485retrotransposon protein, putative, unclassified
LOC_Os10g37620NANA10+19801829..19804432retrotransposon protein, putative, unclassified
LOC_Os10g37630Os.2517.1.S1_a_at11/1110+19805769..19810079UBX domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30703.1.S1_at--176--6471Chr10:19781956..19781980 (25 bp)
GATACAGAGGGCTCGAGTTCTTCCG
LOC_Os10g37580
OsAffx.30703.1.S1_at--1139--5751Chr10:19781885..19781909 (25 bp)
GACGTCGTCTCACGGATGCTGATCG
LOC_Os10g37580
OsAffx.30703.1.S1_at--782--1771Chr10:19781833..19781857 (25 bp)
ACCGGTGGCGGCATGACGAGCTACT
LOC_Os10g37580
OsAffx.30703.1.S1_at--241--691Chr10:19781821..19781845 (25 bp)
ATGACGAGCTACTCGAGGCCACATG
LOC_Os10g37580
OsAffx.30703.1.S1_at--732--1051Chr10:19781761..19781785 (25 bp)
AGGTGTCGCGGCAAGTCGTACCCAG
LOC_Os10g37580
OsAffx.30703.1.S1_at--20--2691Chr10:19781749..19781773 (25 bp)
AAGTCGTACCCAGGAGGTCGTGCTT
LOC_Os10g37580
OsAffx.30703.1.S1_at--685--9291Chr10:19781686..19781710 (25 bp)
TCCGCTTCACCAGCAGAGTGTACAA
LOC_Os10g37580
OsAffx.30703.1.S1_at--1133--4071Chr10:19781524..19781548 (25 bp)
CGAGCCGAATCGCATCTACCACTTG
LOC_Os10g37580
OsAffx.30703.1.S1_at--90--9991Chr10:19781508..19781532 (25 bp)
TACCACTTGGTCAGATTACGCGGCG
LOC_Os10g37580
OsAffx.30703.1.S1_at--946--7271Chr10:19781439..19781463 (25 bp)
GTGCCATTGGACGATCTTCCTGAGC
LOC_Os10g37580
OsAffx.30703.1.S1_at--27--9271Chr10:19781422..19781446 (25 bp)
TCCTGAGCCCCGGACACAGTGGTTT
LOC_Os10g37580
Target Sequence 
GATACAGAGGGCTCGAGTTCTTCCGCGGCGGAGCCTACGTGCTCCTCTCCAACCTCACGGTCGCCGTCGGCGACGTCGTC
TCACGGATGCTGATCGCCACCAGCGTAGGCCTCTCCGGCGCCTACCGGTGGCGGCATGACGAGCTACTCGAGGCCACATG
CCTGGTGCGCTGCGGCGACGACCTCCTGTTCGTCCAGGTGTCGCGGCAAGTCGTACCCAGGAGGTCGTGCTTCCCTCTCC
TCGCCGGCGGCCGCCACCGGCGCCGGCGGCTCCGCTTCACCAGCAGAGTGTACAAGCTGGAGTTCGCGGCGGACGGCAGC
GGCGTGCCGGTGGGGTTCACCAAGGTGGAGAGCATCGGGGAGTACGCGCTGTTCGTGTCGCGGCGCAGCCACGCGTTCGC
GCTCCCGGCTAGCGGAGCGGCTTCCCCGGCGTCGAGCCGAATCGCATCTACCACTTGGTCAGATTACGCGGCGAGGTCGT
CGTCTGCGCACCGTGGGAGACTCGCCGTCTCAAGCCCGTGCCATTGGACGATCTTCCTGAGCCCCGGACACAGTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis