Browse Element(s) Details


Os.2517.1.S1_a_at

Description gb:AK071110.1
DB_XREF= gi:32981133
TID=Os.2517.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0018B10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077I21, full insert sequence.
FL= gb:AK071110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3763011/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37580OsAffx.30703.1.S1_at11/1110+19781388..19782638hypothetical protein
LOC_Os10g37590OsAffx.20192.1.S1_at11/1110+19783639..19784709hypothetical protein
LOC_Os10g37590OsAffx.15567.2.S1_s_at4/1110+19783639..19784709hypothetical protein
LOC_Os10g37600NANA10+19785292..19786407hypothetical protein
LOC_Os10g37604NANA10+19794855..19795967hypothetical protein
LOC_Os10g37610NANA10+19796726..19799485retrotransposon protein, putative, unclassified
LOC_Os10g37620NANA10+19801829..19804432retrotransposon protein, putative, unclassified
LOC_Os10g37630Os.2517.1.S1_a_at11/1110+19805769..19810079UBX domain containing protein, expressed
LOC_Os10g37640Os.46890.1.S1_x_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.1.S1_s_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_x_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2517.1.S1_a_at--346--5531Chr10:19806596..19806620 (25 bp)
GAAAGAAGCCGCTCTTGCAAGGAGG
LOC_Os10g37630
Os.2517.1.S1_a_at--919--8431Chr10:19806560..19806584 (25 bp)
GGCCATGGCTCTTGGAGCAGAACCT
LOC_Os10g37630
Os.2517.1.S1_a_at--819--8091Chr10:19806140..19806553 (25 bp)
GGACCAGATGTTACTCGAGTTCTTA
LOC_Os10g37630
Os.2517.1.S1_a_at--670--6051Chr10:19806084..19806108 (25 bp)
GAGATTCAACAGTTCCACTACCATC
LOC_Os10g37630
Os.2517.1.S1_a_at--990--5691Chr10:19806047..19806071 (25 bp)
GACTATGTTGATTCTTTGGACTGCT
LOC_Os10g37630
Os.2517.1.S1_a_at--1128--9791Chr10:19806008..19806032 (25 bp)
TACAGCCTAGTTTCGAACTTCCCGA
LOC_Os10g37630
Os.2517.1.S1_a_at--863--10651Chr10:19805990..19806014 (25 bp)
TTCCCGAGGGTGACATACGGTCCAG
LOC_Os10g37630
Os.2517.1.S1_a_at--55--5511Chr10:19805966..19805990 (25 bp)
GAAAAACTCTCCCAAACGCTGGAGG
LOC_Os10g37630
Os.2517.1.S1_a_at--220--951Chr10:19805944..19805968 (25 bp)
AGGAAGCAGGTTTGCATCCGCAGGC
LOC_Os10g37630
Os.2517.1.S1_a_at--744--551Chr10:19805929..19805953 (25 bp)
ATCCGCAGGCGAGCTTGTTTATTGA
LOC_Os10g37630
Os.2517.1.S1_a_at--737--5011Chr10:19805858..19805882 (25 bp)
GCAGGTATAGGTGCTCCTTTTACAA
LOC_Os10g37630
Target Sequence 
GAAAGAAGCCGCTCTTGCAAGGAGGAGACAAGAGAAGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTA
CTCGAGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTTCCACTACCATCACTTCACTGTAT
GACTATGTTGATTCTTTGGACTGCTTGAAAGCAGAGAAGTACAGCCTAGTTTCGAACTTCCCGAGGGTGACATACGGTCC
AGAAAAACTCTCCCAAACGCTGGAGGAAGCAGGTTTGCATCCGCAGGCGAGCTTGTTTATTGAGATAGAACAATGAGGTG
TTAAGTTTGTAAGTTCTGAACGGAAACCTGCAGGTATAGGTGCTCCTTTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2517.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis