Browse Element(s) Details


Os.46559.1.S1_at

Description gb:AK121749.1
DB_XREF= gi:37991372
TID=Os.46559.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative actin depolymerizing factor (OSJNBb0018B10.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087E18, full insert sequence.
FL= gb:AK121749.1 gb:AK064063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3767011/11Actin-depolymerizing factor, putative, expressed
LOC_Os07g201702/11Cofilin/tropomyosin-type actin-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37630Os.2517.1.S1_a_at11/1110+19805769..19810079UBX domain containing protein, expressed
LOC_Os10g37640Os.46890.1.S1_x_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.1.S1_s_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_x_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005622cellular_componentintracellular
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46559.1.S1_at--185--7852Chr10:19832369..19832393 (25 bp)
GGTACGCCGTCTACGATCTGGATTT
LOC_Os10g37670
Os.46559.1.S1_at--971--6511Chr10:19832318..19832338 (21 bp)
GATATTCTTCATCTCATGGTCCCCT
LOC_Os10g37670
Os.46559.1.S1_at--1011--4071Chr10:19831703..19831727 (25 bp)
CGAGCCAAGACCATATACGCCGTGT
LOC_Os10g37670
Os.46559.1.S1_at--672--6191Chr10:19831677..19831701 (25 bp)
GAGGAACCAATTTCGGCACGAGCTT
LOC_Os10g37670
Os.46559.1.S1_at--429--1871Chr10:19831660..19831684 (25 bp)
ACGAGCTTGACGGTGTGCACTTTGA
LOC_Os10g37670
Os.46559.1.S1_at--563--9031Chr10:19831645..19831669 (25 bp)
TGCACTTTGAGATTCAGGCCACGGA
LOC_Os10g37670
Os.46559.1.S1_at--939--4392Chr10:19831628..19831652 (25 bp)
GCCACGGACCCTGATGACATGGATT
LOC_Os10g37670
Os.46559.1.S1_at--340--151Chr10:19831542..19831566 (25 bp)
ATTAGCCTTCTTTTGCATAACTTTA
LOC_Os10g37670
Os.46559.1.S1_at--141--2531Chr10:19831524..19831548 (25 bp)
AACTTTAATATGTAGCTCGCTGCTG
LOC_Os10g37670
Os.46559.1.S1_at--661--4351Chr10:19831451..19831475 (25 bp)
CCAGCATTGCAGTTTTACCTTCTTT
LOC_Os10g37670
Os.46559.1.S1_at--629--8151Chr10:19831363..19831387 (25 bp)
GGAAATTGTGCCTTGTTATATCTAA
LOC_Os10g37670
Target Sequence 
GGTACGCCGTCTACGATCTGGATTTCGTCAGCGACGACAACTGCAGGAAGAGCAAGATATTCTTCATCTCATGGTCCCCT
TCTGTTTCCCGCATCCGAGCCAAGACCATATACGCCGTGTCGAGGAACCAATTTCGGCACGAGCTTGACGGTGTGCACTT
TGAGATTCAGGCCACGGACCCTGATGACATGGATTTGGAAGTTCTCAGGGGCCGTGCTAATAGAACCTGATAGAGATTGA
CTTCGATAGTTTGTTAATTAGCCTTCTTTTGCATAACTTTAATATGTAGCTCGCTGCTGAAAATGCATCTCGGGTGCATG
ATGTATAAGCAAGCTGCTGATCACACCCCAGCATTGCAGTTTTACCTTCTTTTTTTACAGAGATAACATCTTTCTGATAT
CTGTCTAATTATATATGTTCCCTCTAATATGATATGGAAATTGTGCCTTGTTATATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis