Browse Element(s) Details


Os.46639.1.A1_x_at

Description gb:NM_197403.1
DB_XREF= gi:37536165
TID=Os.46639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0018B10.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0018B10.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3773010/11pollen ankyrin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed
LOC_Os10g37760Os.37067.1.S1_at11/1110+19877662..19879853Rhomboid family protein, expressed
LOC_Os10g37770Os.46638.1.S1_at11/1110+19881270..19884604methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46639.1.A1_x_at--812--9771Chr10:19859426..19859580 (25 bp)
TAAGGGCCACCTCGACATTGTGACG
LOC_Os10g37730
Os.46639.1.A1_x_at--1044--8951Chr10:19859376..19859400 (25 bp)
TGAACGTACGGAACTACTGCGGGCA
LOC_Os10g37730
Os.46639.1.A1_x_at--520--8271Chr10:19858252..19858276 (25 bp)
GGCAGTACTCCTTTGCATTATGCAG
LOC_Os10g37730
Os.46639.1.A1_x_at--540--3111Chr10:19857219..19857243 (25 bp)
AATTTGGGTTGCTGCACACCGTAGC
LOC_Os10g37730
Os.46639.1.A1_x_at--140--7411Chr10:19857180..19857204 (25 bp)
GTGATCTTTGTGCAGTTTGCCTTGA
LOC_Os10g37730
Os.46639.1.A1_x_at--196--3451NONE
CAGTAGCTGCTGAAGACTCACCAGC
NONE
Os.46639.1.A1_x_at--393--6671Chr10:19856220..19856244 (25 bp)
GTTGCAGCTGTCTCTTCAGAGCTAG
LOC_Os10g37730
Os.46639.1.A1_x_at--944--7351Chr10:19856138..19856162 (25 bp)
GTGACGATGATCCATGTGATGCCAT
LOC_Os10g37730
Os.46639.1.A1_x_at--261--8011Chr10:19856104..19856128 (25 bp)
GGATGGTTCCGAGGTGCAATCTCCT
LOC_Os10g37730
Os.46639.1.A1_x_at--992--5491Chr10:19856040..19856064 (25 bp)
GAACAGCAGGATCTTGACCGGACTA
LOC_Os10g37730
Os.46639.1.A1_x_at--298--2031Chr10:19856019..19856043 (25 bp)
ACTAGCTGCTCAGGCATGTTCTGGA
LOC_Os10g37730
Target Sequence 
TAAGGGCCACCTCGACATTGTGACGCTGTTGCTGGAGAAGGGCGCGGATGTGAACGTACGGAACTACTGCGGGCAGGAGC
TGGCAGTACTCCTTTGCATTATGCAGCTGGTGGAGGAAATGCTGAGTGTTGCCAGAGAATTTGGGTTGCTGCACACCGTA
GCCTCTGTGGATGATAGTGATCTTTGTGCAGTTTGCCTTGAAAGGTCTTGTTCAGTAGCTGCTGAAGACTCACCAGCAAC
TATCAGCAAAGCAGAAATAAGGCGCAACCGTGTTGCAGCTGTCTCTTCAGAGCTAGTCTGCCCACTAACCTGCAGCCCAT
TTCCATCGTCTGCCCTCCCGACCTGCAGGTGCAGTGACGATGATCCATGTGATGCCATAGAAACACAGGATGGTTCCGAG
GTGCAATCTCCTCAGCCATCGCACTGCGCAAGCATGGAGATGGACAAGAGGGAACAGCAGGATCTTGACCGGACTAGCTG
CTCAGGCATGTTCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46639.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis