Browse Element(s) Details


Os.46638.1.S1_at

Description gb:CB676430
DB_XREF= gi:29680155
DB_XREF=OSJNEe12K23.r
CLONE=OSJNEe12K23
TID=Os.46638.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0028C01.40), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3777011/11methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed
LOC_Os10g37760Os.37067.1.S1_at11/1110+19877662..19879853Rhomboid family protein, expressed
LOC_Os10g37770Os.46638.1.S1_at11/1110+19881270..19884604methyltransferase family protein, expressed
LOC_Os10g37780NANA10+19888907..19889467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g37800OsAffx.47.1.S1_at11/1110+19895617..19901898retrotransposon protein, putative, unclassified
LOC_Os10g37810NANA10+19905699..19909455transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46638.1.S1_at--316--8951Chr10:19881876..19882003 (25 bp)
TGACTGGTGTGAGCCATTGCCGACT
LOC_Os10g37770
Os.46638.1.S1_at--388--1731Chr10:19881813..19881833 (21 bp)
ACCATGTACAGAGACAGGTGCGACA
LOC_Os10g37770
Os.46638.1.S1_at--817--5771Chr10:19881612..19881636 (25 bp)
GACGACATCGCCATTTTAGCAAGGA
LOC_Os10g37770
Os.46638.1.S1_at--750--5471Chr10:19881583..19881607 (25 bp)
GAACTTCTTAACTGATCGGATGAGG
LOC_Os10g37770
Os.46638.1.S1_at--940--7651Chr10:19881557..19881581 (25 bp)
GGGATTGCCAGATTTTCGACGGCGA
LOC_Os10g37770
Os.46638.1.S1_at--66--511Chr10:19881518..19881542 (25 bp)
ATCGTGAGAAGATCCTGTTTGCAGC
LOC_Os10g37770
Os.46638.1.S1_at--603--531Chr10:19881507..19881531 (25 bp)
ATCCTGTTTGCAGCGAAGACGTGCT
LOC_Os10g37770
Os.46638.1.S1_at--1025--3331Chr10:19881387..19881411 (25 bp)
CACTGTGTACGCTGTATGACTGATT
LOC_Os10g37770
Os.46638.1.S1_at--18--3571Chr10:19881346..19881370 (25 bp)
CATAATGTCAGGATGCGCCTTTTTT
LOC_Os10g37770
Os.46638.1.S1_at--1074--10311Chr10:19881320..19881344 (25 bp)
TTTCTTTTGGAGCATGACCGTTCAT
LOC_Os10g37770
Os.46638.1.S1_at--51--4031Chr10:19881302..19881326 (25 bp)
CGTTCATACATACCACATTCGCAAT
LOC_Os10g37770
Target Sequence 
TGACTGGTGTGAGCCATTGCCGACTCCCGCCTTGAGCTACGACCTCCTACACGCCGACTCCCTNTTCACCATGTACAGAG
ACAGGTGCGACATGGAGGATATCCTGCTGGAGATGGACAGGATCCTGCGGCCCGGGCGCGCCGTGATCATCCGCGACGAC
ATCGCCATTTTAGCAAGGATCAAGAACTTCTTAACTGATCGGATGAGGTGGGATTGCCAGATTTTCGACGGCGAGGATGG
CTCGGACGATCGTGAGAAGATCCTGTTTGCAGCGAAGACGTGCTGTAACGATGAGGATCGAGATCAGGAGCAATGAGCAT
GATCATTTAGGATGACCAAATACAGACAGATGATTGATGATCACATTCATACACTGATACACTGTGTACGCTGTATGACT
GATTTGTGATTTGTAAAGCACATAATGTCAGGATGCGCCTTTTTTTTTTCTTTTGGAGCATGACCGTTCATACATACCAC
ATTCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis