Browse Element(s) Details


OsAffx.6895.1.S1_at

Description tigr:9638.m03379
TID=OsAffx.6895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative alphabeta hydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3772011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed
LOC_Os10g37760Os.37067.1.S1_at11/1110+19877662..19879853Rhomboid family protein, expressed
LOC_Os10g37770Os.46638.1.S1_at11/1110+19881270..19884604methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6895.1.S1_at--292--471Chr10:19855907..19855931 (25 bp)
ATCTCCCACATTGAGCTGCTATGAA
LOC_Os10g37720
OsAffx.6895.1.S1_at--844--51Chr10:19855972..19855996 (25 bp)
ATTGATCTCTGCATTACACTGCTCC
LOC_Os10g37720
OsAffx.6895.1.S1_at--595--5491Chr10:19856023..19856047 (25 bp)
GAACATGCCTGAGCAGCTAGTCCGG
LOC_Os10g37720
OsAffx.6895.1.S1_at--924--1551Chr10:19856037..19856061 (25 bp)
AGCTAGTCCGGTCAAGATCCTGCTG
LOC_Os10g37720
OsAffx.6895.1.S1_at--344--471Chr10:19856075..19856099 (25 bp)
ATCTCCATGCTTGCGCAGTGCGATG
LOC_Os10g37720
OsAffx.6895.1.S1_at--456--971Chr10:19856104..19856128 (25 bp)
AGGAGATTGCACCTCGGAACCATCC
LOC_Os10g37720
OsAffx.6895.1.S1_at--993--8171Chr10:19856119..19856143 (25 bp)
GGAACCATCCTGTGTTTCTATGGCA
LOC_Os10g37720
OsAffx.6895.1.S1_at--799--371Chr10:19856143..19856167 (25 bp)
ATCACATGGATCATCGTCACTGCAC
LOC_Os10g37720
OsAffx.6895.1.S1_at--535--9871Chr10:19856290..19856314 (25 bp)
TACAGATCGGGTGTTTAGCATGCAT
LOC_Os10g37720
OsAffx.6895.1.S1_at--251--5911Chr10:19856336..19856360 (25 bp)
GAGCTAGATTTAAGCCCTTCTGTTG
LOC_Os10g37720
OsAffx.6895.1.S1_at--173--8471Chr10:19856359..19856383 (25 bp)
TGGCGTGCTTGGCAACTTGGTAAAT
LOC_Os10g37720
Target Sequence 
ATCTCCCACATTGAGCTGCTATGAATCCAGATATATTAACAACCAGAAAGAAGAAACAATCAAGCATTGATCTCTGCATT
ACACTGCTCCTCCCTGTGGCAGCTTCTTCGGCTCCAGAACATGCCTGAGCAGCTAGTCCGGTCAAGATCCTGCTGTTCCC
TCTTGTCCATCTCCATGCTTGCGCAGTGCGATGGCTGAGGAGATTGCACCTCGGAACCATCCTGTGTTTCTATGGCATCA
CATGGATCATCGTCACTGCACCTGCAGGTCGGGAGGGCAGACGATGGAAATGGGCTGCAGGTTAGTGGGCAGACTAGCTC
TGAAGAGACAGCTGCAACACGGTTGCGCCTTATTTCTGCTTTGCTGATAGTTGCTGGTGAGTCTACAGATCGGGTGTTTA
GCATGCATGGATTACAGAACGTGAGTGCTGAGCTAGATTTAAGCCCTTCTGTTGGCGTGCTTGGCAACTTGGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis