Browse Element(s) Details


Os.46640.1.S1_at

Description gb:NM_197399.1
DB_XREF= gi:37536157
TID=Os.46640.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46640 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Oxa1 protein (OSJNBb0018B10.22), mRNA.
PROD=putative Oxa1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g376905/11Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37640Os.46890.1.S1_x_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.1.S1_s_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_x_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46640.1.S1_at--869--851Chr10:19839807..19839831 (25 bp)
ATGGCTGTTTTGACAGTCCCATTCA
LOC_Os10g37690
Os.46640.1.S1_at--971--2391Chr10:19840556..19840580 (25 bp)
AAACTTGTTCACTCTGACATATGGT
LOC_Os10g37690
Os.46640.1.S1_at--808--251Chr10:19840574..19840690 (25 bp)
ATATGGTTTTGTTATCCGGCGACCG
LOC_Os10g37690
Os.46640.1.S1_at--56--4271Chr10:19840681..19840705 (25 bp)
CCGGCGACCGGCTGTGAGGAAATTT
LOC_Os10g37690
Os.46640.1.S1_at--825--3831Chr10:19840716..19840740 (25 bp)
CTGCTTTGGAAGCTCAGTCTGCATC
LOC_Os10g37690
Os.46640.1.S1_at--808--451NONE
ATCTCGGAGGCGCAGTTTCTTGACT
NONE
Os.46640.1.S1_at--838--6831Chr10:19842081..19842105 (25 bp)
GTTTCTTGACTGGTGATCCGATAAC
NONE
Os.46640.1.S1_at--542--2311Chr10:19842113..19842137 (25 bp)
AAAGGAACAGTCTTGCCGTTCTGCC
NONE
Os.46640.1.S1_at--736--3031NONE
AATCCTTCCGTACAGGCAGACATGT
NONE
Os.46640.1.S1_at--971--2991Chr10:19843263..19843287 (25 bp)
CAATACCCGAACTGAACCAAACTCT
NONE
Os.46640.1.S1_at--813--3691Chr10:19843308..19843332 (25 bp)
CTAGAACTTGTTTTGACCAGGGAGA
NONE
Target Sequence 
ATGGCTGTTTTGACAGTCCCATTCACAATGAGTTTTGCCAAGGGAATTTTCTGTTACTGGATTACATCAAACTTGTTCAC
TCTGACATATGGTTTTGTTATCCGGCGACCGGCTGTGAGGAAATTTTGTAATCTTCCTGCTTTGGAAGCTCAGTCTGCAT
CTGCAAAGAAGCAAATGTTCAATCTATTTGGTGGATCCAAGGCATTAACTACAGCAGAGTCACCTGTAGCAATTACGGGA
GGTCCGCAATCTAGTTTGGAGCAACCTGATGCTGCTGCTCTGGGCTATCGGGTCAAAAATCCTGAGAAGAAGGCAAAATC
CAGAGGCAAATCTCGGAGGCGCAGTTTCTTGACTGGTGATCCGATAACTGGTGGGAAAGGAACAGTCTTGCCGTTCTGCC
AATCCTTCCGTACAGGCAGACATGTGAATGCAGCAATGCGCAACGCCGACACAATACCCGAACTGAACCAAACTCTCCAC
ACACCAACTCCCAAGCCTAGAACTTGTTTTGACCAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis