Browse Element(s) Details


Os.46890.1.S1_s_at

Description gb:AK103797.1
DB_XREF= gi:32989006
TID=Os.46890.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0018B10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145P15, full insert sequence.
FL= gb:AK103797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3764011/11HIT zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37600NANA10+19785292..19786407hypothetical protein
LOC_Os10g37604NANA10+19794855..19795967hypothetical protein
LOC_Os10g37610NANA10+19796726..19799485retrotransposon protein, putative, unclassified
LOC_Os10g37620NANA10+19801829..19804432retrotransposon protein, putative, unclassified
LOC_Os10g37630Os.2517.1.S1_a_at11/1110+19805769..19810079UBX domain containing protein, expressed
LOC_Os10g37640Os.46890.1.S1_x_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.1.S1_s_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_x_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46890.1.S1_s_at--1087--4211Chr10:19811370..19811394 (25 bp)
CCGCAGATAGGAAGTTGTACTTCAT
LOC_Os10g37640
Os.46890.1.S1_s_at--1115--7791Chr10:19811310..19811334 (25 bp)
GGTCGTCTTTAGCTCGCCTCGTTGA
LOC_Os10g37640
Os.46890.1.S1_s_at--140--9411Chr10:19811308..19811332 (25 bp)
TCGTCTTTAGCTCGCCTCGTTGAGG
LOC_Os10g37640
Os.46890.1.S1_s_at--342--7851Chr10:19811230..19811254 (25 bp)
GGTAGAAAGAACGATGCCCAATCCA
LOC_Os10g37640
Os.46890.1.S1_s_at--803--1411Chr10:19811227..19811251 (25 bp)
AGAAAGAACGATGCCCAATCCAAGG
LOC_Os10g37640
Os.46890.1.S1_s_at--1120--6891Chr10:19811125..19811149 (25 bp)
GTATCATGTATGGCTGTATAATCTT
LOC_Os10g37640
Os.46890.1.S1_s_at--74--11Chr10:19811092..19811116 (25 bp)
AGAACTTCGGATGTTACTTCCCCAT
LOC_Os10g37640
Os.46890.1.S1_s_at--1120--2511Chr10:19811090..19811114 (25 bp)
AACTTCGGATGTTACTTCCCCATGA
LOC_Os10g37640
Os.46890.1.S1_s_at--602--2051Chr10:19811089..19811113 (25 bp)
ACTTCGGATGTTACTTCCCCATGAG
LOC_Os10g37640
Os.46890.1.S1_s_at--999--10611Chr10:19811087..19811111 (25 bp)
TTCGGATGTTACTTCCCCATGAGTT
LOC_Os10g37640
Os.46890.1.S1_s_at--270--9431Chr10:19811086..19811110 (25 bp)
TCGGATGTTACTTCCCCATGAGTTT
LOC_Os10g37640
Target Sequence 
CCGCAGATAGGAAGTTGTACTTCATGACATGCTGGGTTCATGAGCAACCAAATGAGGCATGGTCGTCTTTAGCTCGCCTC
GTTGAGGTGCAGNAAGCATCTCTGGAGGAGTTGGATTGCGGGAGNCNANTTCAAAGGGCTGGTAGAAAGAACGATGCCCA
ATCCAAGGNTCTTATTGAGGAGATTTGAGCGTGAGAATGTATTGATGCAAGTGATACTCATAATCTTCNTACCCCTATAT
CAGCTGTATCATGTATGGCTGTATAATCTTTGTTGTAAAGAACTTCGGATGTTACTTCCCCATGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46890.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis