Browse Element(s) Details


Os.16221.1.S1_at

Description gb:AK109013.1
DB_XREF= gi:32994222
TID=Os.16221.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alphabeta hydrolase (OSJNBb0018B10.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-A01, full insert sequence.
FL= gb:AK109013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3771011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16221.1.S1_at--510--4511Chr10:19847339..19847359 (21 bp)
GCCGACGGCACCCTCCAAAAGAAGA
LOC_Os10g37710
Os.16221.1.S1_at--419--2891Chr10:19849031..19849055 (25 bp)
AAGGGATCAACGAGTCGTACTACAG
LOC_Os10g37710
Os.16221.1.S1_at--674--9351Chr10:19849045..19849069 (25 bp)
TCGTACTACAGGGACATGACGGTGA
LOC_Os10g37710
Os.16221.1.S1_at--425--8191Chr10:19849187..19849211 (25 bp)
GGAAGCTCGGCTGGGTCAGCTACCA
LOC_Os10g37710
Os.16221.1.S1_at--154--6731Chr10:19849267..19849291 (25 bp)
GTTCTCCGGACACTTTTCGGCTGAT
LOC_Os10g37710
Os.16221.1.S1_at--268--5631Chr10:19849275..19849299 (25 bp)
GACACTTTTCGGCTGATCAGCAACG
LOC_Os10g37710
Os.16221.1.S1_at--865--1331Chr10:19849336..19849360 (25 bp)
AGAGTAGTACTACAGTGCTCAGTTA
LOC_Os10g37710
Os.16221.1.S1_at--1005--7311Chr10:19849350..19849374 (25 bp)
GTGCTCAGTTAATCTCACATGACTA
LOC_Os10g37710
Os.16221.1.S1_at--73--5711Chr10:19849370..19849394 (25 bp)
GACTACATGAGGCAGCATTCAGATT
LOC_Os10g37710
Os.16221.1.S1_at--203--6531Chr10:19849419..19849443 (25 bp)
GATTTGTGCTGCCAAGAAACCCTGC
LOC_Os10g37710
Os.16221.1.S1_at--123--4791Chr10:19849426..19849450 (25 bp)
GCTGCCAAGAAACCCTGCTAAGTGA
LOC_Os10g37710
Target Sequence 
GCCGACGGCACCCTCCAAAAGAAGAAGGAGATGGCGACGCAGCAAGGGATCAACGAGTCGTACTACAGGGACATGACGGT
GANTGNTTCGGGAAGTGGGANTTCGACCCGATGGCGCTGCCGGAGCCGCCGTNGCCCGGTGCACATCTGGCAGGNCGNCG
AGGACGGCCTCGTCCCCGTCGCGCTGCAGCGGCACGTCGCCGGGAAGCTCGGCTGGGTCAGCTACCACGANCTCCCCGGC
ACCGGCCACTTCCTCTCCGCCGTCCCCGGCCTCGGCNGANACCGTTCTCCGGACACTTTTCGGCTGATCAGCAACGATAA
AATACAGAAGAAGAGTGATGCAAAAATACAGTAGAGTAGTACTACAGTGCTCAGTTAATCTCACATGACTACATGAGGCA
GCATTCAGATTTTTTTTTCCTTTTATTTTGTAGCAGATTTGTGCTGCCAAGAAACCCTGCTAAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16221.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis