Browse Element(s) Details


Os.37067.1.S1_at

Description gb:AK061038.1
DB_XREF= gi:32971056
TID=Os.37067.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane protein (OSJNBb0028C01.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-C01, full insert sequence.
FL= gb:AK061038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3776011/11Rhomboid family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed
LOC_Os10g37760Os.37067.1.S1_at11/1110+19877662..19879853Rhomboid family protein, expressed
LOC_Os10g37770Os.46638.1.S1_at11/1110+19881270..19884604methyltransferase family protein, expressed
LOC_Os10g37780NANA10+19888907..19889467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g37800OsAffx.47.1.S1_at11/1110+19895617..19901898retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37067.1.S1_at--355--10171Chr10:19878589..19878749 (25 bp)
TATACACGAACAAGGCTGCAGCTCT
LOC_Os10g37760
Os.37067.1.S1_at--1149--9031Chr10:19878741..19878765 (25 bp)
TGCAGCTCTAGTGACGCTCTTGATC
LOC_Os10g37760
Os.37067.1.S1_at--885--3311Chr10:19878820..19878844 (25 bp)
CACATCGGAGGGTTCTTGACTGGGT
LOC_Os10g37760
Os.37067.1.S1_at--48--8871Chr10:19878866..19878890 (25 bp)
TGATGCGCCCACACTACGGATGGAT
LOC_Os10g37760
Os.37067.1.S1_at--393--8551Chr10:19878886..19878910 (25 bp)
TGGATGCAGCGATATGTCCTGCCTT
LOC_Os10g37760
Os.37067.1.S1_at--550--3771Chr10:19878912..19878936 (25 bp)
CTCTGTCAAGTACACCTCCAAGAAG
LOC_Os10g37760
Os.37067.1.S1_at--1153--6971Chr10:19878936..19878960 (25 bp)
GTACCTGGCTTATCAATGGATCTTG
LOC_Os10g37760
Os.37067.1.S1_at--322--6631Chr10:19879561..19879585 (25 bp)
GTTGGGCTGTCGATGCTCTTCAGAG
LOC_Os10g37760
Os.37067.1.S1_at--1129--7751Chr10:19879587..19879611 (25 bp)
GGTGAATGCTAATGAACGCTGCCAT
LOC_Os10g37760
Os.37067.1.S1_at--1001--3711Chr10:19879637..19879661 (25 bp)
CTACCTCGAGATGGACCTGCGGGAA
LOC_Os10g37760
Os.37067.1.S1_at--832--6591Chr10:19879797..19879821 (25 bp)
GATTGATTCATTCTGTTCGTTTGTC
LOC_Os10g37760
Target Sequence 
TATACACGAACAAGGCTGCAGCTCTAGTGACGCTCTTGATCGTCATCGCGATCAACCTCGCCATCGGCATCCTCCCTCAC
GTCGACAACTTCGCCCACATCGGAGGGTTCTTGACTGGGTTCCTCCTCGGATTCATCTTCCTGATGCGCCCACACTACGG
ATGGATGCAGCGATATGTCCTGCCTTCCTCTGTCAAGTACACCTCCAAGAAGTACCTGGCTTATCAATGGATCTTGCTGG
NCGTGGCCTCGGTCCTAGCTGTCATCGGATTCGCCGTTGGGCTGTCGATGCTCTTCAGAGGGGTGAATGCTAATGAACGC
TGCCATTGGTGCCACTACCTGAGCTGCATTCCTACCTCGAGATGGACCTGCGGGAACTGAAGATTTAGTAGAAACGCAAC
AAACTGAAGACATTAAGGAGATTTATTGAAAGTGTTTGATGCACAGACATACAATTTTACTGTATATAACTTATACAGAC
ATACCCTCCCAGGGGTTTAGTCAGTTCACTTGATTGATTCATTCTGTTCGTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis