Browse Element(s) Details


OsAffx.47.1.S1_at

Description gb:NM_197410.1
DB_XREF= gi:37536179
TID=OsAffx.47.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBb0028C01.38), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3780011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37740Os.6722.1.S1_at11/1110+19866927..19871650Shaggy-related protein kinase theta, putative, expressed
LOC_Os10g37760Os.37067.1.S1_at11/1110+19877662..19879853Rhomboid family protein, expressed
LOC_Os10g37770Os.46638.1.S1_at11/1110+19881270..19884604methyltransferase family protein, expressed
LOC_Os10g37780NANA10+19888907..19889467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g37800OsAffx.47.1.S1_at11/1110+19895617..19901898retrotransposon protein, putative, unclassified
LOC_Os10g37810NANA10+19905699..19909455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.14491.2.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.47463.1.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.47.1.S1_at--327--5991Chr10:19897790..19897814 (25 bp)
GAGACTTAACTTTGGGATCATTACT
LOC_Os10g37800
OsAffx.47.1.S1_at--1007--10511Chr10:19897734..19897758 (25 bp)
TTCAGAAGTTTAGGCCCATCTGCTT
LOC_Os10g37800
OsAffx.47.1.S1_at--1040--4531Chr10:19897379..19897745 (25 bp)
GCCCATCTGCTTACTAAATACTTTC
LOC_Os10g37800
OsAffx.47.1.S1_at--668--10351Chr10:19897331..19897355 (25 bp)
TTTATCCCCTCTGCTGTTTAATTTA
LOC_Os10g37800
OsAffx.47.1.S1_at--139--5411Chr10:19897300..19897324 (25 bp)
GAAGCTCTGACCCTCTTAGTGAAGA
LOC_Os10g37800
OsAffx.47.1.S1_at--397--8971Chr10:19896834..19896971 (25 bp)
TGAAAACAAGGGTCCCTCAGGGTGT
LOC_Os10g37800
OsAffx.47.1.S1_at--1119--5512Chr10:19896582..19896606 (25 bp)
GAAAAAACCCATGTCTGTCCTCAAA
LOC_Os10g37800
OsAffx.47.1.S1_at--21--2392Chr10:19896559..19896583 (25 bp)
AAACTAAAGCTGGTGACTCCCACTT
LOC_Os10g37800
OsAffx.47.1.S1_at--456--5712Chr10:19896545..19896569 (25 bp)
GACTCCCACTTTTGGCAGGGTCTTA
LOC_Os10g37800
OsAffx.47.1.S1_at--962--1014Chr11:27296910..27296929 (20 bp)
AGGTCGATCAAAGAAGGCTGCTCTT
NONE
OsAffx.47.1.S1_at--971--2832Chr10:19895653..19895677 (25 bp)
AAGTGACGTCTTCAATTCCAAGTTT
LOC_Os10g37800
Target Sequence 
GAGACTTAACTTTGGGATCATTACTTTGGTACCAAAGTGTAAGGATGCTGCACAAATTCAGAAGTTTAGGCCCATCTGCT
TACTAAATACTTTCAAGGGACTTAGACAAGGTGATCCTTTATCCCCTCTGCTGTTTAATTTAGCAGCAGAAGCTCTGACC
CTCTTAGTGAAGAGAGCTGAGGAGAATTCTTTAATAGAAGGTCTAGGAATCAATGATGAAAACAAGGGTCCCTCAGGGTG
TAAAAGAGAGATCTGGAACTTGGAAAATGGGGATGGGTGGTGGCAGGATATGCTGAGGGATAAATATTTGAAGAAAAAAC
CCATGTCTGTCCTCAAAACTAAAGCTGGTGACTCCCACTTTTGGCAGGGTCTTATGGAAAAACAGGAGGTCGATCAAAGA
AGGCTGCTCTTGGGGGCCCGACTTATAAGACAAGTGGCAAGTGACGTCTTCAATTCCAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.47.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis