Browse Element(s) Details


Os.3246.2.S1_at

Description gb:CA763370
DB_XREF= gi:25807409
DB_XREF=BR060010B20B09.ab1
CLONE=BR060010B20B09.ab1
TID=Os.3246.2
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0028C01.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3783011/11F-box family protein, putative, expressed
LOC_Os02g131602/11F-box family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37800OsAffx.47.1.S1_at11/1110+19895617..19901898retrotransposon protein, putative, unclassified
LOC_Os10g37810NANA10+19905699..19909455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.14491.2.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.47463.1.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3246.2.S1_at--830--8872Chr10:19924407..19924431 (25 bp)
TGATGGGCAGCACTCATTATCTCAG
LOC_Os10g37830
Os.3246.2.S1_at--1004--153Chr10:19924422..19924446 (25 bp)
ATTATCTCAGTGCTCCCTGGGTGAG
LOC_Os10g37830
Os.3246.2.S1_at--835--3971Chr10:19924449..19924473 (25 bp)
CGGGAGTTGGGTACTTTACCATGCA
LOC_Os10g37830
Os.3246.2.S1_at--316--7691Chr10:19924457..19924481 (25 bp)
GGGTACTTTACCATGCAGGCGATTT
LOC_Os10g37830
Os.3246.2.S1_at--223--3532Chr10:19924468..19924492 (25 bp)
CATGCAGGCGATTTTGTGGTCTCAA
LOC_Os10g37830
Os.3246.2.S1_at--515--2872Chr10:19924553..19924577 (25 bp)
AAGGTGGTCTTTGTGTCGACTCGGC
LOC_Os10g37830
Os.3246.2.S1_at--299--3112Chr10:19924698..19924722 (25 bp)
AATTTGGGCTCATGTATGCGCGGCG
LOC_Os10g37830
Os.3246.2.S1_at--268--612Chr10:19924713..19924737 (25 bp)
ATGCGCGGCGAAAGGTGTATATAAT
LOC_Os10g37830
Os.3246.2.S1_at--3--7412Chr10:19924756..19924780 (25 bp)
GTGATCGGTAACATGAATGTGCTTT
LOC_Os10g37830
Os.3246.2.S1_at--163--2991Chr10:19924771..19924795 (25 bp)
AATGTGCTTTGTGTGTCCATTTTCC
LOC_Os10g37830
Os.3246.2.S1_at--505--8671Chr10:19924782..19924806 (25 bp)
TGTGTCCATTTTCCCATGGTTTTTC
LOC_Os10g37830
Target Sequence 
TGATGGGCAGCACTCATTATCTCAGTGCTCCCTGGGTGAGCCCGGGAGTTGGGTACTTTACCATGCAGGCGATTTTGTGG
TCTCAAAGCCTGACCAAACAATCAAGCTNGAAGTTCTCGATGGCGCAGATCGATTGCACACACACAAAAGGTGGTCTTTG
TGTCGACTCGGCGTTCATATACCCAAAGGGCTTTNCAGCAGGAGAGGATGGTCAGGTCTCAGAAATGTAGATGTTGAGAA
GGAACTTACATTAGATTGTAGACAAATGCAGCTTGCAGCCTAATTCTATTTTTAATTTGGGCTCATGTATGCGCGGCGAA
AGGTGTATATAATTGTAGGCTTCAATTTTGTGTGATCGGTAACATGAATGTGCTTTGTGTGTCCATTTTCCCATGGTTTT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3246.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis