Browse Element(s) Details


OsAffx.6896.1.S1_at

Description tigr:9638.m03392
TID=OsAffx.6896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37810NANA10+19905699..19909455transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.14491.2.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37820Os.47463.1.S1_x_at3/1110+19911815..19915419transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6896.1.S1_at--455--7791Chr10:19930371..19930395 (25 bp)
GGTATTCCTATATCTTGAAACCATG
LOC_Os10g37840
OsAffx.6896.1.S1_at--616--5191Chr10:19930436..19930460 (25 bp)
GCAATCATTTATTTTGAACACCGTT
LOC_Os10g37840
OsAffx.6896.1.S1_at--119--4051Chr10:19930457..19930481 (25 bp)
CGTTGTAGCCACCTATCCAATATTA
LOC_Os10g37840
OsAffx.6896.1.S1_at--1004--3691Chr10:19930469..19930493 (25 bp)
CTATCCAATATTAGGCCTATGCAAT
LOC_Os10g37840
OsAffx.6896.1.S1_at--945--3271Chr10:19930504..19930528 (25 bp)
CAAAATGTATCCTTTAGAGCCTGTA
LOC_Os10g37840
OsAffx.6896.1.S1_at--248--10031Chr10:19930518..19930542 (25 bp)
TAGAGCCTGTATTAGGTTCCTAGTA
LOC_Os10g37840
OsAffx.6896.1.S1_at--1140--4271Chr10:19930536..19930560 (25 bp)
CCTAGTAAATTTGACTGACTTGTAC
LOC_Os10g37840
OsAffx.6896.1.S1_at--608--8151Chr10:19930569..19930593 (25 bp)
GGAAATTCTGATTCTGAGCAGTAGT
LOC_Os10g37840
OsAffx.6896.1.S1_at--421--5351Chr10:19930661..19930685 (25 bp)
GAAGATATCTTTATGCTTCCATAGT
LOC_Os10g37840
OsAffx.6896.1.S1_at--18--4931Chr10:19930675..19930699 (25 bp)
GCTTCCATAGTTCCATATCCTGAGA
LOC_Os10g37840
OsAffx.6896.1.S1_at--918--1231Chr10:19930683..19930707 (25 bp)
AGTTCCATATCCTGAGAACATCTTG
LOC_Os10g37840
Target Sequence 
GGTATTCCTATATCTTGAAACCATGTTTTTTTTTTCTTTTTTCAGCTATATGAACTTGAAATTTTGCAATCATTTATTTT
GAACACCGTTGTAGCCACCTATCCAATATTAGGCCTATGCAATAAACTATTGACAAAATGTATCCTTTAGAGCCTGTATT
AGGTTCCTAGTAAATTTGACTGACTTGTACAAATCTATGGAAATTCTGATTCTGAGCAGTAGTGTAAAATAGTTTCACCA
AACTTTGGTGTGTAAAGTAAAATCAACATATACAAATATATGTGATCCAAGAAGATATCTTTATGCTTCCATAGTTCCAT
ATCCTGAGAACATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis