Browse Element(s) Details


Os.3241.1.S1_at

Description gb:AK068326.1
DB_XREF= gi:32978344
TID=Os.3241.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0028C01.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013139O05, full insert sequence.
FL= gb:AK068326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g378609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3241.1.S1_at--1017--6051Chr10:19942686..19942710 (25 bp)
GAGTTGAATAGAGCCATCGACCAGT
NONE
Os.3241.1.S1_at--266--531Chr10:19942671..19942695 (25 bp)
ATCGACCAGTGAAGGCTGTGGCCAT
NONE
Os.3241.1.S1_at--793--8071Chr10:19942637..19942661 (25 bp)
GGAGCTAGGCATACTGCTCATCCCA
LOC_Os10g37860
Os.3241.1.S1_at--367--2551Chr10:19942486..19942510 (25 bp)
AACTCCATGGCCCTGATGCTGTGAA
LOC_Os10g37860
Os.3241.1.S1_at--1089--5631Chr10:19942460..19942484 (25 bp)
GACTTGGAGGCAGCAGGTACTCCCT
LOC_Os10g37860
Os.3241.1.S1_at--361--7011Chr10:19942444..19942468 (25 bp)
GTACTCCCTGCAGAGCTGAACTGAT
LOC_Os10g37860
Os.3241.1.S1_at--1141--6991Chr10:19942395..19942419 (25 bp)
GTACTCCTGCAGAGCTGAACTGATT
LOC_Os10g37860
Os.3241.1.S1_at--532--6711Chr10:19942363..19942387 (25 bp)
GTTCTGAAGAACTCGTCTGTTCGTG
LOC_Os10g37860
Os.3241.1.S1_at--1115--10791Chr10:19942334..19942358 (25 bp)
TTGTTCTCTCTTTTGACTATTCGGC
LOC_Os10g37860
Os.3241.1.S1_at--1133--10751Chr10:19942322..19942346 (25 bp)
TTGACTATTCGGCTGTTCATCCTTC
LOC_Os10g37860
Os.3241.1.S1_at--233--10551Chr10:19942307..19942331 (25 bp)
TTCATCCTTCCTTTTTTGTACAATA
LOC_Os10g37860
Target Sequence 
GAGTTGAATAGAGCCATCGACCAGTGAAGGCTGTGGCCATGCCGGTGATGGAGCTAGGCATACTGCTCATCCCACTGACC
CTCGTCTTCGTGCCTTGCCGGCGGATCGTCCTCTTCCTCAAGAGGCTCCAGGAGTTCCACCGGAGCATCACCCACCCGAG
CTTCACCTCCGCCGACATGNTCAGCCGCTTCTCCAGCTTCAACTCCATGGCCCTGATGCTGTGAAGGACTTGGAGGCAGC
AGGTACTCCCTGCAGAGCTGAACTGATTNTTAACTGTTCTGGAGGCAGCAGGTACTCCTGCAGAGCTGAACTGATTNTTA
ACTGTTCTGAAGAACTCGTCTGTTCGTGAAANTTGTTCTCTCTTTTGACTATTCGGCTGTTCATCCTTCCTTTTTTGTAC
AATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis