Browse Element(s) Details


Os.52772.1.S1_at

Description gb:AK069167.1
DB_XREF= gi:32979191
TID=Os.52772.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009D19, full insert sequence.
FL= gb:AK069167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g378991/11transposon protein, putative, unclassified, expressed
LOC_Os06g173091/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37920OsAffx.30707.1.S1_at11/1110+19977688..19979307MATE efflux family protein, expressed
LOC_Os10g37940OsAffx.45.1.S1_at11/1110+19990396..19996007retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52772.1.S1_at--905--34910Chr11:5765029..5765052 (24 bp)
CATGTCAATGGGTCCCACAAATATA
NONE
Os.52772.1.S1_at--1134--5774Chr03:33508692..33508716 (25 bp)
GACGAAGACCGGGTCAATACCGCCA
NONE
Os.52772.1.S1_at--957--4379Chr12:26416200..26416224 (25 bp)
CCAATACCGCTAAGGGAGTCAAATT
NONE
Os.52772.1.S1_at--1126--1131Chr10:19963302..19963326 (25 bp)
AGTCGTTCTCTCTGGTTTTCTGGTT
NONE
Os.52772.1.S1_at--562--6573Chr10:19963262..19963286 (25 bp)
GATTCGGCATACAATTAAGGGAGTC
NONE
Os.52772.1.S1_at--31--10591Chr10:19963225..19963249 (25 bp)
TTCCTTTCATTTCAGGTTTCAGCCT
NONE
Os.52772.1.S1_at--609--6451Chr10:19963193..19963217 (25 bp)
GATCAACCACTGATCACTCACTGCT
NONE
Os.52772.1.S1_at--823--9691Chr10:19963180..19963204 (25 bp)
TCACTCACTGCTCACTAGTCAATAG
NONE
Os.52772.1.S1_at--853--10051Chr10:19963158..19963182 (25 bp)
TAGTCAATCATCACTCATCAGAGCT
NONE
Os.52772.1.S1_at--80--391Chr10:19963142..19963166 (25 bp)
ATCAGAGCTGCTTCATACTAAATTA
NONE
Os.52772.1.S1_at--1159--8731Chr10:19963095..19963119 (25 bp)
TGTAGCAGCCAATTTAATGGGAGCC
NONE
Target Sequence 
CATGTCAATGGGTCCCACAAATATATTTTTTTTGGTGTGAATGACAGATGGGTCCCACATTTTTTTTTAATTCTAATGCC
ACTTAAGCGCCACGTGGGACGAAGACCGGGTCAATACCGCCACGTCAGCGCCACATCAGCAAAACCGCCCTCCAATACCG
CTAAGGGAGTCAAATTGCACCGGTTTCAATAGTTCGGGGAGTCGTTCTCTCTGGTTTTCTGGTTGAGGGGTACGAATTAG
ATTCGGCATACAATTAAGGGAGTCAAAGTGGACTTTTTCCTTTCATTTCAGGTTTCAGCCTGATCAGTGATCAACCACTG
ATCACTCACTGCTCACTAGTCAATAGTCAATCATCACTCATCAGAGCTGCTTCATACTAAATTATGGTAAAAATGGAGCT
GCAACATGTAGCAGCCAATTTAATGGGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis