Browse Element(s) Details


OsAffx.45.1.S1_at

Description gb:NM_197423.1
DB_XREF= gi:37536205
TID=OsAffx.45.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0096G08.10), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3794011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37920OsAffx.30707.1.S1_at11/1110+19977688..19979307MATE efflux family protein, expressed
LOC_Os10g37940OsAffx.45.1.S1_at11/1110+19990396..19996007retrotransposon protein, putative, unclassified
LOC_Os10g37950OsAffx.20188.1.S1_at11/1110+19997687..19998864hypothetical protein
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.45.1.S1_at--673--7611Chr10:19995465..19995489 (25 bp)
GGGAATTTTTCAGTTCGCACAGCTT
LOC_Os10g37940
OsAffx.45.1.S1_at--931--2691Chr10:19995524..19995548 (25 bp)
AAGCTCGAGTTCCTCTGATGTCAAC
LOC_Os10g37940
OsAffx.45.1.S1_at--67--10851Chr10:19995611..19995635 (25 bp)
TTGGAGAGCAACCTCTAACTGCCTT
LOC_Os10g37940
OsAffx.45.1.S1_at--629--9771Chr10:19995626..19995650 (25 bp)
TAACTGCCTTCCTACTTGGGACAAC
LOC_Os10g37940
OsAffx.45.1.S1_at--1044--311Chr10:19995679..19995703 (25 bp)
ATACGTGCGTCATCTGTGGCATGGA
LOC_Os10g37940
OsAffx.45.1.S1_at--485--9831Chr10:19995746..19995770 (25 bp)
TAAACACCTCTGGTTAGCCATGAAG
LOC_Os10g37940
OsAffx.45.1.S1_at--716--10211Chr10:19995808..19995832 (25 bp)
TATTAGGCCCATCCTGGCTTTTCAA
LOC_Os10g37940
OsAffx.45.1.S1_at--530--8811Chr10:19995844..19995868 (25 bp)
TGTTGCCGGATCATGAACAGCCCAT
LOC_Os10g37940
OsAffx.45.1.S1_at--1160--731Chr10:19995867..19995891 (25 bp)
ATGTTTCTTATGGTTCTGTGGCGAA
LOC_Os10g37940
OsAffx.45.1.S1_at--948--771Chr10:19995919..19995943 (25 bp)
ATGGGAAACCGAGCCCTTCGATAGA
LOC_Os10g37940
OsAffx.45.1.S1_at--1159--6191Chr10:19995942..19995966 (25 bp)
GAGGCTTCACAACGGTTCTTACAGA
LOC_Os10g37940
Target Sequence 
GGGAATTTTTCAGTTCGCACAGCTTATAGGCTGGCAGAGAATTGGGCTAAAGAGGAAGCAAGCTCGAGTTCCTCTGATGT
CAACATCAGGAAAGCTTGGGAATTGTTATGGAAATGTAATGTTCCATCCAAAGTTAAAATCTTCACTTGGAGAGCAACCT
CTAACTGCCTTCCTACTTGGGACAACAAGAAGAAACGGAACCTGGAGATTTCTGATACGTGCGTCATCTGTGGCATGGAG
AAGGAAGATACAATGCATGCCCTATGCCGCTGTCCGCAAGCTAAACACCTCTGGTTAGCCATGAAGGAATCAAATGATCT
GTCACTAAGGATGGATGATCACTTATTAGGCCCATCCTGGCTTTTCAATCGGCTGGCCTTGTTGCCGGATCATGAACAGC
CCATGTTTCTTATGGTTCTGTGGCGAATTTGGTTCGTCCATAATGAGATCATACATGGGAAACCGAGCCCTTCGATAGAG
GCTTCACAACGGTTCTTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.45.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis