Browse Element(s) Details


OsAffx.20187.1.S1_at

Description gb:NM_197425.1
DB_XREF= gi:37536209
TID=OsAffx.20187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0096G08.13), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3796011/11retrotransposon protein, putative, unclassified
LOC_Os09g342703/11hypothetical protein
LOC_Os08g129003/11retrotransposon protein, putative, unclassified
LOC_Os07g129501/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37940OsAffx.45.1.S1_at11/1110+19990396..19996007retrotransposon protein, putative, unclassified
LOC_Os10g37950OsAffx.20188.1.S1_at11/1110+19997687..19998864hypothetical protein
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein
LOC_Os10g38000OsAffx.30708.1.S1_x_at11/1110+20025393..20025974AP2 domain containing protein
LOC_Os10g38020Os.23271.2.A1_x_at11/1110+20031264..20035426expressed protein
LOC_Os10g38020Os.23271.1.S1_at1/1110+20031264..20035426expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20187.1.S1_at--994--6271Chr10:20006895..20006919 (25 bp)
GATGAAAGGCTTTTCACCTAAAAGG
LOC_Os10g37960
OsAffx.20187.1.S1_at--1077--1035Chr08:6089657..6089680 (24 bp)
AGGTGTCAATGGATAGCTTCTTTCA
NONE
OsAffx.20187.1.S1_at--841--1534Chr08:6089670..6089694 (25 bp)
AGCTTCTTTCATTCAAGGTGGTCAT
NONE
OsAffx.20187.1.S1_at--598--4293Chr08:6089764..6089788 (25 bp)
CCTCTGTCTCCGATTCTTTTTAATA
NONE
OsAffx.20187.1.S1_at--505--6553Chr10:20006754..20006778 (25 bp)
GATTCTTTTTAATATCGTGGCTGAT
LOC_Os10g37960
OsAffx.20187.1.S1_at--50--6151Chr10:20006681..20006705 (25 bp)
GAGGTAATACCTCATTTAATGGATG
LOC_Os10g37960
OsAffx.20187.1.S1_at--815--10233Chr08:6089916..6089940 (25 bp)
TTTGGAGCATGATTTACAAGAAGCC
NONE
OsAffx.20187.1.S1_at--484--2897Chr11:22292543..22292566 (24 bp)
AAGGTAGTTTTCAGGGCAACACATT
NONE
OsAffx.20187.1.S1_at--21--73911Chr11:22292609..22292633 (25 bp)
GTGAGCTTTTAAAGGCTGCATGCCG
NONE
OsAffx.20187.1.S1_at--209--4779Chr11:22292623..22292647 (25 bp)
GCTGCATGCCGTATTCTTGAGACAA
NONE
OsAffx.20187.1.S1_at--521--119Chr11:22292635..22292659 (25 bp)
ATTCTTGAGACAACGGTTATGCAAC
NONE
Target Sequence 
GATGAAAGGCTTTTCACCTAAAAGGTGTCAATGGATAGCTTCTTTCATTCAAGGTGGTCATGTTGGTATTAAAGTAAATG
ATCAAGTTGGAAATAACTTCCAAACCTATAAAGGGCTTAGGCAAGGAGATCCTCTGTCTCCGATTCTTTTTAATATCGTG
GCTGATATGCTAGCTTTACTAATTAAGAGGGCTAAAGATGATGGTATGTTAAGTGAGGTAATACCTCATTTAATGGATGA
TGGTTTATCTATTTTGCAATATGCTGATGATACCATCATATTTTTGGAGCATGATTTACAAGAAGCCAAGAATTTGAAAT
TGATTTTAACAGTGTTTGAAAAGTTATCTGGCTTGAAAATAAATTTTCACAAAAAAAGCTTGGCAATAAAGATTGGAAGA
TTATCGAACAAAGAATTGAGAAGAAACTTAGTAGTTGGAAAGGTAGTTTTCAGGGCAACACATTGGCTCCGGTCTTGGGC
ACAACTACAAAAGTGTGAGGAAGATAGTGAGCTTTTAAAGGCTGCATGCCGTATTCTTGAGACAACGGTTATGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis