Browse Element(s) Details


OsAffx.20188.1.S1_at

Description tigr:9638.m03406
TID=OsAffx.20188.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3795011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37920OsAffx.30707.1.S1_at11/1110+19977688..19979307MATE efflux family protein, expressed
LOC_Os10g37940OsAffx.45.1.S1_at11/1110+19990396..19996007retrotransposon protein, putative, unclassified
LOC_Os10g37950OsAffx.20188.1.S1_at11/1110+19997687..19998864hypothetical protein
LOC_Os10g37960OsAffx.20187.1.S1_at11/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29576.5.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.13325.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37960OsAffx.29169.1.S1_at1/1110+20005058..20009410retrotransposon protein, putative, unclassified
LOC_Os10g37970OsAffx.24701.1.S1_at3/1110+20010619..20012297hypothetical protein
LOC_Os10g37970OsAffx.13010.1.S1_x_at2/1110+20010619..20012297hypothetical protein
LOC_Os10g37980Os.17540.1.S1_at11/1110+20015431..20017319prephenate dehydratase family protein, expressed
LOC_Os10g37990OsAffx.20185.1.S1_at10/1110+20022516..20025009hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20188.1.S1_at--900--10431Chr10:19998807..19998831 (25 bp)
TTAGAGACTGAACTTGCCGCCTGTG
LOC_Os10g37950
OsAffx.20188.1.S1_at--91--6133Chr10:19998780..19998804 (25 bp)
GAGGGCCTTCGGTTAGCACTGCAAT
LOC_Os10g37950
OsAffx.20188.1.S1_at--648--8131Chr10:19998755..19998779 (25 bp)
GGACACTGCTGCTGGTTGCAATTGA
LOC_Os10g37950
OsAffx.20188.1.S1_at--876--5191Chr10:19998738..19998762 (25 bp)
GCAATTGAAACGGACTGCATCTCAG
LOC_Os10g37950
OsAffx.20188.1.S1_at--415--4972Chr10:19998722..19998746 (25 bp)
GCATCTCAGTTGTGCATCTACTCAC
LOC_Os10g37950
OsAffx.20188.1.S1_at--202--9771Chr10:19998694..19998718 (25 bp)
TAAGGAGGACTGCTTAACCCTGGCG
LOC_Os10g37950
OsAffx.20188.1.S1_at--783--2614Chr10:19998679..19998703 (25 bp)
AACCCTGGCGTTTCTAGTCAGAGAA
LOC_Os10g37950
OsAffx.20188.1.S1_at--932--111Chr10:19998551..19998575 (25 bp)
ATTACTCAGGCTTTTGGGCTGGGTT
LOC_Os10g37950
OsAffx.20188.1.S1_at--901--3894Chr10:19998533..19998557 (25 bp)
CTGGGTTTGAGTCCAATTCTGTTTC
LOC_Os10g37950
OsAffx.20188.1.S1_at--340--6351Chr10:19997802..19997826 (25 bp)
GATGCCTCAAAGATGTGCCTATGGA
LOC_Os10g37950
OsAffx.20188.1.S1_at--698--7913Chr10:19997751..19997775 (25 bp)
GGTTGCTTACTAACTTTGCCAAATC
LOC_Os10g37950
Target Sequence 
TTAGAGACTGAACTTGCCGCCTGTGTGGAGGGCCTTCGGTTAGCACTGCAATGGACACTGCTGCTGGTTGCAATTGAAAC
GGACTGCATCTCAGTTGTGCATCTACTCACTAATAAGGAGGACTGCTTAACCCTGGCGTTTCTAGTCAGAGAAGCAAGAT
GGCTTCGATCAGGAGAAAGGACGACTTCTATTACGAAGATCCAGCGGGAACAAAATTTGATTAGCCATGAATTAGCAAAC
AAAGCTAGAAGGGACGATTACTCAGGCTTTTGGGCTGGGTTTGAGTCCAATTCTGTTTCATGGTTGATTGAAAAAGACTT
CCATGAGAAGGTGAAAGGATGCCTCAAAGATGTGCCTATGGAATGGGCCGTGTCACCAGGGGATATTTGGTTGCTTACTA
ACTTTGCCAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis