Browse Element(s) Details


OsAffx.24701.1.S1_at

Description tigr:9630.m04184
TID=OsAffx.24701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g434909/11hypothetical protein
LOC_Os09g210405/11expressed protein
LOC_Os03g247703/11expressed protein
LOC_Os10g379703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43450OsAffx.22848.4.S1_at2/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43450OsAffx.22848.4.S1_x_at1/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43460OsAffx.12476.1.S1_at11/112+26227039..26232421Helicase conserved C-terminal domain containing protein
LOC_Os02g43470Os.8131.1.S1_at11/112+26234257..26237113Glutamate dehydrogenase A, putative, expressed
LOC_Os02g43480Os.25217.1.S1_at11/112+26237799..26240283expressed protein
LOC_Os02g43490OsAffx.24701.1.S1_at9/112+26240930..26242296hypothetical protein
LOC_Os02g43490OsAffx.13010.1.S1_x_at1/112+26240930..26242296hypothetical protein
LOC_Os02g43500Os.14058.1.S1_at11/112+26242755..26246139chaperone protein dnaJ, putative, expressed
LOC_Os02g43510OsAffx.12477.1.A1_at2/112+26247149..26247875hypothetical protein
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24701.1.S1_at--593--873Chr10:20010977..20011000 (24 bp)
ATGGCCTCACGGTACGCAACACCAT
LOC_Os10g37970
OsAffx.24701.1.S1_at--45--1933Chr03:14098133..14098156 (24 bp)
ACGGTACGCAACACCATGGCGGAGC
NONE
OsAffx.24701.1.S1_at--1058--4094Chr10:20011670..20011694 (25 bp)
CGACTAGACGCGGTGTGCGCTGAAG
LOC_Os10g37970
OsAffx.24701.1.S1_at--1082--3974Chr10:20011680..20011704 (25 bp)
CGGTGTGCGCTGAAGAGCTCGAGCA
LOC_Os10g37970
OsAffx.24701.1.S1_at--389--1591Chr02:26241153..26241177 (25 bp)
AGCTCGAGCATGCAGATCCTTCGGA
LOC_Os02g43490
OsAffx.24701.1.S1_at--536--5931Chr02:26241158..26241182 (25 bp)
GAGCATGCAGATCCTTCGGAGCAGA
LOC_Os02g43490
OsAffx.24701.1.S1_at--543--651Chr02:26241162..26241186 (25 bp)
ATGCAGATCCTTCGGAGCAGAGATT
LOC_Os02g43490
OsAffx.24701.1.S1_at--300--1292Chr02:26241166..26241190 (25 bp)
AGATCCTTCGGAGCAGAGATTGGGA
LOC_Os02g43490
OsAffx.24701.1.S1_at--350--32Chr02:26241184..26241208 (25 bp)
ATTGGGAAGACTGGACTCTGCTCGC
LOC_Os02g43490
OsAffx.24701.1.S1_at--806--2752Chr02:26241190..26241214 (25 bp)
AAGACTGGACTCTGCTCGCGGTTGC
LOC_Os02g43490
OsAffx.24701.1.S1_at--764--3832Chr03:14098419..14098443 (25 bp)
CTGCTCGCGGTTGCCAATGGCGTCA
LOC_Os03g24770
Target Sequence 
ATGGCCTCACGGTACGCAACACCATGGCGGAGCCAGAGAAGGCGATGGGTTCCCCGGCCGCGAAGGAGCTGGAGAAGACG
CCGCCTCCTCCTGCAACTGATGGCCCCAGCGGTGACATTATGCAGCGGCAGTATAAGAAGGACGCCGACGCCACCCATGG
CACACTTGTTGGCGACGACGCGGACGAGGCGCGCCGCCTCTTCCTCGCGGACGTGGTGGAGCGACTAGACGCGGTGTGCG
CTGAAGAGCTCGAGCATGCAGATCCTTCGGAGCAGAGATTGGGAAGACTGGACTCTGCTCGCGGTTGCCAATGGCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis