Browse Element(s) Details


Os.25217.1.S1_at

Description gb:AK062626.1
DB_XREF= gi:32972644
TID=Os.25217.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C03, full insert sequence.
FL= gb:AK062626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4348011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43450OsAffx.22848.4.S1_at2/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43450OsAffx.22848.4.S1_x_at1/112+26212956..26220376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43460OsAffx.12476.1.S1_at11/112+26227039..26232421Helicase conserved C-terminal domain containing protein
LOC_Os02g43470Os.8131.1.S1_at11/112+26234257..26237113Glutamate dehydrogenase A, putative, expressed
LOC_Os02g43480Os.25217.1.S1_at11/112+26237799..26240283expressed protein
LOC_Os02g43490OsAffx.24701.1.S1_at9/112+26240930..26242296hypothetical protein
LOC_Os02g43490OsAffx.13010.1.S1_x_at1/112+26240930..26242296hypothetical protein
LOC_Os02g43500Os.14058.1.S1_at11/112+26242755..26246139chaperone protein dnaJ, putative, expressed
LOC_Os02g43510OsAffx.12477.1.A1_at2/112+26247149..26247875hypothetical protein
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25217.1.S1_at--710--9071Chr02:26239008..26239032 (25 bp)
TGCTTCTGAGCAGGGAGTTTCATGT
LOC_Os02g43480
Os.25217.1.S1_at--709--5451Chr02:26238972..26238996 (25 bp)
GAACTGTTGCAATTCAGGTGCATCA
LOC_Os02g43480
Os.25217.1.S1_at--80--4971Chr02:26238953..26238977 (25 bp)
GCATCAAATTGAGTCCCTTGTCGCA
LOC_Os02g43480
Os.25217.1.S1_at--1048--4171Chr02:26238939..26238963 (25 bp)
CCCTTGTCGCAATGCTTCGGCAAAA
LOC_Os02g43480
Os.25217.1.S1_at--9--6611Chr02:26238696..26238720 (25 bp)
GATTGTACACGGTCATTTCTTTCGC
LOC_Os02g43480
Os.25217.1.S1_at--619--3951Chr02:26238687..26238711 (25 bp)
CGGTCATTTCTTTCGCTAGAAGTTA
LOC_Os02g43480
Os.25217.1.S1_at--797--5311Chr02:26238669..26238693 (25 bp)
GAAGTTACAAGTACTGGGTTGCCAG
LOC_Os02g43480
Os.25217.1.S1_at--705--10151Chr02:26238457..26238481 (25 bp)
TATCGATTACATGGGCTTCCTGAAT
LOC_Os02g43480
Os.25217.1.S1_at--1082--111Chr02:26238104..26238458 (25 bp)
ATTCTATAAGAATCCACGGCCACAT
LOC_Os02g43480
Os.25217.1.S1_at--930--4931Chr02:26238064..26238088 (25 bp)
GCATTGGGTGATGTTAGCTGCAAAC
LOC_Os02g43480
Os.25217.1.S1_at--45--5171Chr02:26237967..26237991 (25 bp)
GCAAGTTTAGTCATGTAGTGTGTAA
LOC_Os02g43480
Target Sequence 
TGCTTCTGAGCAGGGAGTTTCATGTAAGTTTAGGAAGAACTGTTGCAATTCAGGTGCATCAAATTGAGTCCCTTGTCGCA
ATGCTTCGGCAAAAGTTCCGCTCNCAGCAACGGTATTGGATGGANTTCAACAAATGGGAGCATTTTGTCAATGATGATTG
TACACGGTCATTTCTTTCGCTAGAAGTTACAAGTACTGGGTTGCCAGAGATTAGTAAACAGATAACGATGGTAGATGATG
TATATCGATTACATGGGCTTCCTGAATTCTATAAGAATCCACGGCCACATATATCNCTGGCGTGGGCATTGGGTGATGTT
AGCTGCAAACTGAANCAAGCAATTAAGGAGATCGAAAAATNTCAGAGCAGTCTGGNCNCATCTCAAANATNTAATNTGAG
ATGCAAGTTTAGTCATGTAGTGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis