Browse Element(s) Details


OsAffx.22848.4.S1_at

Description gb:NM_197463.1
DB_XREF= gi:37536285
TID=OsAffx.22848.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0034L04.35), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3837011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g437803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g417403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g274903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g550202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g526902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g630902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g047202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g476102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g404702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g185202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g453702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g027802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g294902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g297002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g112202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g468802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g063102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g014302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g562602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g067702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g361002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g310702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g015342/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g048602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g535902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g423642/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g173702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g589202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g635502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g080402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g077502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g350402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g036302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g454302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g081502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g360502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g380302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g068302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g278702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g438002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g362392/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g036002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g034602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g366202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g175102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g405702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g225702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g353902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g433902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g359302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g434502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g612702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g187602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g387102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g407202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g536502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g592502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g115902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g733202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g636602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g381802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g441501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g454401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g201701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g303201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38270OsAffx.30475.3.S1_s_at11/1110+20148368..20149879ATP synthase alpha chain, putative, expressed
LOC_Os10g38292OsAffx.22955.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.22955.2.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32209.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.26770.2.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32208.1.S1_x_at10/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_x_at6/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314NANA10+20155218..20156398Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340Os.9013.1.S1_at11/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340Os.46634.1.S1_x_at1/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350Os.46635.1.S1_x_at11/1110+20163648..20164516glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360Os.13015.1.S1_at10/1110+20168320..20169412Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370OsAffx.22848.4.S1_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370OsAffx.22848.4.S1_x_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38386NANA10+20182358..20182789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38402NANA10+20185594..20192256retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38420NANA10+20198629..20199851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38440OsAffx.18568.1.S1_at10/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38440OsAffx.14234.1.S1_at2/1110+20202693..20204410transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22848.4.S1_at--754--5811Chr10:20178709..20178733 (25 bp)
GACCCATGTCGTGTGTCGATTTGGT
LOC_Os10g38370
OsAffx.22848.4.S1_at--444--771Chr10:20178714..20178738 (25 bp)
ATGTCGTGTGTCGATTTGGTTGTCC
LOC_Os10g38370
OsAffx.22848.4.S1_at--342--9431Chr10:20178717..20178741 (25 bp)
TCGTGTGTCGATTTGGTTGTCCCAA
LOC_Os10g38370
OsAffx.22848.4.S1_at--810--7471Chr10:20178719..20178743 (25 bp)
GTGTGTCGATTTGGTTGTCCCAAGA
LOC_Os10g38370
OsAffx.22848.4.S1_at--939--7455Chr10:20178721..20178745 (25 bp)
GTGTCGATTTGGTTGTCCCAAGAAG
LOC_Os10g38370
OsAffx.22848.4.S1_at--1106--96167Chr12:18650808..18651021 (25 bp)
TCAGTTCACCTCAAGTTATCAGGCC
LOC_Os12g31070
OsAffx.22848.4.S1_at--775--67564Chr12:18650811..18651024 (25 bp)
GTTCACCTCAAGTTATCAGGCCAGC
LOC_Os12g31070
OsAffx.22848.4.S1_at--1008--9771Chr10:20179045..20179069 (25 bp)
TAAGGTTGGCGAAGCACTGGTGTTC
LOC_Os10g38370
OsAffx.22848.4.S1_at--70--6371Chr10:20179111..20179135 (25 bp)
GATCCGACAATGTTTAAAGACAACT
LOC_Os10g38370
OsAffx.22848.4.S1_at--315--2291Chr10:20179126..20179150 (25 bp)
AAAGACAACTCAGAACCGTCAGAAG
LOC_Os10g38370
OsAffx.22848.4.S1_at--516--8731Chr10:20179186..20179210 (25 bp)
TGAAAAAGGAGATCTTGTGTACTTG
LOC_Os10g38370
Target Sequence 
GACCCATGTCGTGTGTCGATTTGGTTGTCCCAAGAAGATTGTGTCGGATCGAGGCACTCAGTTCACCTCAAGTTATCAGG
CCAGCATTCAGATGTCGCCGAATGAGGCAATGTTCGGAAGAAAGTGCCGCACTCCCTTGTGCTGGAATAAGGTTGGCGAA
GCACTGGTGTTCGGTCCTGACATACTCAAGGCAGCAGAAGAACAAGTTAAGCTGATCCGACAATGTTTAAAGACAACTCA
GAACCGTCAGAAGAATTACGCTGACAATCGGAGGCGTGACCTTGAGTTTGAAAAAGGAGATCTTGTGTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22848.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis