Browse Element(s) Details


OsAffx.18568.1.S1_at

Description gb:NM_197470.1
DB_XREF= gi:37536299
TID=OsAffx.18568.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034L04.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3844010/11transposon protein, putative, unclassified
LOC_Os12g243001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38370OsAffx.22848.4.S1_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370OsAffx.22848.4.S1_x_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38386NANA10+20182358..20182789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38402NANA10+20185594..20192256retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38420NANA10+20198629..20199851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38440OsAffx.18568.1.S1_at10/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38440OsAffx.14234.1.S1_at2/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38450Os.46812.2.S1_x_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38450Os.46812.1.S1_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38460NANA10+20214943..20215845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38470Os.5441.1.S1_at11/1110+20221525..20222677glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.7794.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.2612.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_x_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18568.1.S1_at--228--491Chr10:20204006..20204030 (25 bp)
ATCGGTCTTCCTGGAGCTTCGGCGA
LOC_Os10g38440
OsAffx.18568.1.S1_at--1081--3771NONE
CTCGGCTGCGTGGAGCGTTACAGTA
NONE
OsAffx.18568.1.S1_at--124--10052Chr12:13858999..13859019 (21 bp)
TAGAGGAAGTGGAGCACGCCTCGCC
LOC_Os12g24300
OsAffx.18568.1.S1_at--973--5751Chr10:20203040..20203064 (25 bp)
GACGGGCGACGCATCACATGCAGCG
LOC_Os10g38440
OsAffx.18568.1.S1_at--45--8431Chr10:20202980..20203004 (25 bp)
TGCGCCGACGTAAACCTGGTACCTG
LOC_Os10g38440
OsAffx.18568.1.S1_at--590--7431Chr10:20202947..20202971 (25 bp)
GTGTCAAATTGGTACCTAGGTATCA
LOC_Os10g38440
OsAffx.18568.1.S1_at--488--6892Chr06:26010141..26010333 (25 bp)
GTATCAAATCTTGGTACCTGAGTAC
NONE
OsAffx.18568.1.S1_at--1012--1691Chr10:20202905..20202929 (25 bp)
ACCAAGCGTGGTACCCCAAGAGAGA
LOC_Os10g38440
OsAffx.18568.1.S1_at--431--6011Chr10:20202872..20202896 (25 bp)
GAGAGCATCTCGGTTTCACTTGAGG
LOC_Os10g38440
OsAffx.18568.1.S1_at--456--9691Chr10:20202857..20202881 (25 bp)
TCACTTGAGGCGGAGAGATGTCACC
LOC_Os10g38440
OsAffx.18568.1.S1_at--452--5091Chr10:20202809..20202833 (25 bp)
GCACGAGGCAAGACCACAGCGCTGC
LOC_Os10g38440
Target Sequence 
ATCGGTCTTCCTGGAGCTTCGGCGACGGACAGCGAGGGCGACTGCAGGGCAGGGGCGACAATGGCGCGGCAGCGTGGAGA
GTGAAGCGGGAGGGGTTGAGAGGAGGGGCTCGGCTGCGTGGAGCGTTACAGTAGAGGAAGTGGAGCACGCCTCGCCGGTG
GAGCCGGAGCAGGAGGCGGCGAGCAAGGTCGGGGAGCGCAAGCGGCTCGACGGGCGACGCATCACATGCAGCGCGTCCAC
GAGCGGCGGCGCTTCCACGAGCGGGAGGTGCGCCGACGTAAACCTGGTACCTGGTACCCTGGTGTCAAATTGGTACCTAG
GTATCAAATCTTGGTACCTGAGTACCAAGCGTGGTACCCCAAGAGAGAGAGCGAACGAGAGCATCTCGGTTTCACTTGAG
GCGGAGAGATGTCACCGCCGGCCACCGCGGCCGCTGCTCGCACGAGGCAAGACCACAGCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis