Browse Element(s) Details


Os.5441.1.S1_at

Description gb:AK108376.1
DB_XREF= gi:32993585
TID=Os.5441.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (OSJNBa0034L04.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E01, full insert sequence.
FL= gb:AK108376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3847011/11glutathione S-transferase GSTU6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38420NANA10+20198629..20199851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38440OsAffx.18568.1.S1_at10/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38440OsAffx.14234.1.S1_at2/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38450Os.46812.2.S1_x_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38450Os.46812.1.S1_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38460NANA10+20214943..20215845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38470Os.5441.1.S1_at11/1110+20221525..20222677glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.7794.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.2612.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_x_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38510OsAffx.30711.1.S1_at11/1110+20235991..20236556hypothetical protein
LOC_Os10g38520OsAffx.29536.3.S1_x_at3/1110+20239435..20239857hypothetical protein
LOC_Os10g38540Os.7174.1.S1_at11/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540Os.46634.1.S1_x_at1/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540Os.46635.1.S1_x_at1/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5441.1.S1_at--288--5331Chr10:20222385..20222409 (25 bp)
GAAGTGACAGTTGACTTGTCGTGTC
LOC_Os10g38470
Os.5441.1.S1_at--717--10471Chr10:20222473..20222497 (25 bp)
TTACGAGTTCAGATGTGTTACTACA
LOC_Os10g38470
Os.5441.1.S1_at--641--6751Chr10:20222479..20222503 (25 bp)
GTTCAGATGTGTTACTACAGTAGTA
LOC_Os10g38470
Os.5441.1.S1_at--209--3731Chr10:20222493..20222517 (25 bp)
CTACAGTAGTAGTAACTTGGGTTGA
LOC_Os10g38470
Os.5441.1.S1_at--153--191Chr10:20222522..20222546 (25 bp)
ATATCTAGGGAACAGTTTGTCCAAG
LOC_Os10g38470
Os.5441.1.S1_at--1098--5411Chr10:20222531..20222555 (25 bp)
GAACAGTTTGTCCAAGGTAAAATGT
LOC_Os10g38470
Os.5441.1.S1_at--301--2031Chr10:20222594..20222618 (25 bp)
ACTAGTACAAGTGGCGTCTGGGTGA
LOC_Os10g38470
Os.5441.1.S1_at--853--4571Chr10:20222607..20222631 (25 bp)
GCGTCTGGGTGAGAAAGGTCTTTAC
LOC_Os10g38470
Os.5441.1.S1_at--743--7271Chr10:20222615..20222639 (25 bp)
GTGAGAAAGGTCTTTACAACTTAAT
LOC_Os10g38470
Os.5441.1.S1_at--1150--9831Chr10:20222629..20222653 (25 bp)
TACAACTTAATAACATGGCCCAATG
LOC_Os10g38470
Os.5441.1.S1_at--785--3491Chr10:20222642..20222666 (25 bp)
CATGGCCCAATGAAAATAATTACAG
LOC_Os10g38470
Target Sequence 
GAAGTGACAGTTGACTTGTCGTGTCATGCCGAAGACGAACGGATGTTGGGNATTGTTTCCATCTGTTTCACAGTCGAGTG
TCGTGTACGTTACGAGTTCAGATGTGTTACTACAGTAGTAGTAACTTGGGTTGAAAAAATATCTAGGGAACAGTTTGTCC
AAGGTAAAATGTTATAAACCGAAATGAATAGTGTTAATTAGAGAAAAGAAACTAGTACAAGTGGCGTCTGGGTGAGAAAG
GTCTTTACAACTTAATAACATGGCCCAATGAAAATAATTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis