Browse Element(s) Details


Os.46812.2.S1_x_at

Description gb:NM_197471.1
DB_XREF= gi:37536301
TID=Os.46812.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46812 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBa0034L04.27), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3845011/11Leucine Rich Repeat family protein, expressed
LOC_Os10g331401/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38402NANA10+20185594..20192256retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38420NANA10+20198629..20199851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38440OsAffx.18568.1.S1_at10/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38440OsAffx.14234.1.S1_at2/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38450Os.46812.2.S1_x_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38450Os.46812.1.S1_at11/1110+20208026..20210800Leucine Rich Repeat family protein, expressed
LOC_Os10g38460NANA10+20214943..20215845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38470Os.5441.1.S1_at11/1110+20221525..20222677glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.7794.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.2612.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_x_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0050832biological_processdefense response to fungi
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46812.2.S1_x_at--902--7311Chr10:20209110..20209134 (25 bp)
GTGAAATCCCTACAGTCCAGACGAA
LOC_Os10g38450
Os.46812.2.S1_x_at--1048--2192Chr10:20209083..20209107 (25 bp)
ACAACTGTTCTCTTGAATCGGTTCA
LOC_Os10g38450
Os.46812.2.S1_x_at--76--3051Chr10:20209068..20209092 (25 bp)
AATCGGTTCATCTTGCCGACAACGG
LOC_Os10g38450
Os.46812.2.S1_x_at--295--7071Chr10:20209008..20209032 (25 bp)
GTAAGGCGCTGATCACCCTAGATAT
LOC_Os10g38450
Os.46812.2.S1_x_at--203--31Chr10:20208946..20208970 (25 bp)
ATTGGGAAAGGCCTTCTGTCGTTGA
LOC_Os10g38450
Os.46812.2.S1_x_at--471--3871Chr10:20208931..20208955 (25 bp)
CTGTCGTTGAAGTTTCTTAGCCTGA
LOC_Os10g38450
Os.46812.2.S1_x_at--683--5571Chr10:20208886..20208910 (25 bp)
GAAATCCCTTCAGAGTTGTCGAATC
LOC_Os10g38450
Os.46812.2.S1_x_at--465--5251Chr10:20208866..20208890 (25 bp)
GAATCTCTCTCAACTTCAACTGTTA
LOC_Os10g38450
Os.46812.2.S1_x_at--965--3171Chr10:20208724..20208748 (25 bp)
AATTGGCTGCTTTACTCGGATGGAA
LOC_Os10g38450
Os.46812.2.S1_x_at--676--10171Chr10:20208479..20208662 (25 bp)
TATCAATTTGTCAGGAGCCATTCCT
LOC_Os10g38450
Os.46812.2.S1_x_at--289--4451Chr10:20208450..20208474 (25 bp)
GCCTTGCTGATATATCTACTCTTGA
LOC_Os10g38450
Target Sequence 
GTGAAATCCCTACAGTCCAGACGAACTACAACTGTTCTCTTGAATCGGTTCATCTTGCCGACAACGGCTTCACCGGTGTT
TTTCCATCATCGTTAGAGATGTGTAAGGCGCTGATCACCCTAGATATTGGGAACAACAGATTCTTTGGAGGTATTCCTCC
TTGGATTGGGAAAGGCCTTCTGTCGTTGAAGTTTCTTAGCCTGAAATCAAACAACTTCACAGGTGAAATCCCTTCAGAGT
TGTCGAATCTCTCTCAACTTCAACTGTTAGACATAAGCAACAACGGTTTGACAGGATTGATTCCCAAATCTTTTGGCAAC
CTAACTTCCATGAAGAATCCAAATACTTTATCTGCTCAAGAAACATTAGAATGGTCTTCTTACATAAATTGGCTGCTTTA
CTCGGATGGAATCGATACAATCTGGAAGGGGCAAGAGCAATTTTTCGAAAAAACAATTGAATTACTAACGGGTATCAATT
TGTCAGGAGCCATTCCTCCAAGCCTTGCTGATATATCTACTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46812.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis