Browse Element(s) Details


OsAffx.30711.1.S1_at

Description tigr:9638.m03463
TID=OsAffx.30711.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3851011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38460NANA10+20214943..20215845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38470Os.5441.1.S1_at11/1110+20221525..20222677glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.7794.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.2612.1.S1_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38489Os.46634.1.S1_x_at11/1110+20223979..20231020glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38510OsAffx.30711.1.S1_at11/1110+20235991..20236556hypothetical protein
LOC_Os10g38520OsAffx.29536.3.S1_x_at3/1110+20239435..20239857hypothetical protein
LOC_Os10g38540Os.7174.1.S1_at11/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540Os.46634.1.S1_x_at1/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540Os.46635.1.S1_x_at1/1110+20245154..20246432glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38550NANA10+20250679..20251251transposon protein, putative, unclassified
LOC_Os10g38560NANA10+20252697..20254109retrotransposon protein, putative, unclassified
LOC_Os10g38570NANA10+20257542..20258111transposon protein, putative, unclassified
LOC_Os10g38580Os.5053.1.S1_at11/1110+20260075..20261169glutathione S-transferase GSTU6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30711.1.S1_at--965--8171Chr10:20236449..20236473 (25 bp)
GGAAGCAGATGCTACAGTTGGTGGG
LOC_Os10g38510
OsAffx.30711.1.S1_at--786--7311Chr10:20236423..20236447 (25 bp)
GTGCTGCTGCATGGTCCGTCAACAA
LOC_Os10g38510
OsAffx.30711.1.S1_at--689--4771Chr10:20236421..20236445 (25 bp)
GCTGCTGCATGGTCCGTCAACAAGA
LOC_Os10g38510
OsAffx.30711.1.S1_at--776--3271Chr10:20236039..20236428 (25 bp)
CAACAAGATCAGGTGTTTGCTGTGG
LOC_Os10g38510
OsAffx.30711.1.S1_at--532--2811Chr10:20236035..20236424 (25 bp)
AAGATCAGGTGTTTGCTGTGGAACC
LOC_Os10g38510
OsAffx.30711.1.S1_at--492--411Chr10:20236032..20236053 (22 bp)
ATCAGGTGTTTGCTGTGGAACCACA
LOC_Os10g38510
OsAffx.30711.1.S1_at--406--9611Chr10:20236031..20236053 (23 bp)
TCAGGTGTTTGCTGTGGAACCACAC
LOC_Os10g38510
OsAffx.30711.1.S1_at--138--1051Chr10:20236029..20236053 (25 bp)
AGGTGTTTGCTGTGGAACCACACCA
LOC_Os10g38510
OsAffx.30711.1.S1_at--385--7431Chr10:20236027..20236051 (25 bp)
GTGTTTGCTGTGGAACCACACCAAT
LOC_Os10g38510
OsAffx.30711.1.S1_at--502--6851Chr10:20236025..20236049 (25 bp)
GTTTGCTGTGGAACCACACCAATTA
LOC_Os10g38510
OsAffx.30711.1.S1_at--113--4711Chr10:20236021..20236045 (25 bp)
GCTGTGGAACCACACCAATTATCCA
LOC_Os10g38510
Target Sequence 
GGAAGCAGATGCTACAGTTGGTGGGGGTGCTGCTGCATGGTCCGTCAACAAGATCAGGTGTTTGCTGTGGAACCACACCA
ATTATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis