Browse Element(s) Details


OsAffx.29536.3.S1_x_at

Description tigr:9635.m00035
TID=OsAffx.29536.3
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g013304/11transposon protein, putative, unclassified
LOC_Os10g385203/11hypothetical protein
LOC_Os02g372701/11transposon protein, putative, unclassified
LOC_Os06g139701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01310Os.40446.1.S1_at9/117+189343..194728Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g01320Os.6121.1.S1_at11/117+194377..198122expressed protein
LOC_Os07g01330OsAffx.29536.3.S1_x_at4/117+206625..207089transposon protein, putative, unclassified
LOC_Os07g01340Os.30269.1.S1_at11/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g01340Os.23988.1.A1_at10/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g01350NANA7+224327..224677hypothetical protein
LOC_Os07g01360Os.51841.1.S1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.45902.1.A1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.10263.1.S1_at1/117+228887..231134Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29536.3.S1_x_at--734--8457Chr10:20239198..20239222 (25 bp)
TGGCTAACCGGAGCGAGCGGCTACC
NONE
OsAffx.29536.3.S1_x_at--51--18114Chr10:20239220..20239316 (25 bp)
ACCGCCGGCAGCTAGAGGAGCTTGT
NONE
OsAffx.29536.3.S1_x_at--539--1571Chr10:20239229..20239325 (25 bp)
AGCTAGAGGAGCTTGTCGGATCGGG
NONE
OsAffx.29536.3.S1_x_at--763--771Chr10:20239327..20239351 (25 bp)
ATGTGGTCGCGCAAGGGAAGGGACA
NONE
OsAffx.29536.3.S1_x_at--698--5116Chr10:20239359..20239383 (25 bp)
GCAAACTCGGGCCTAGCCGAAACGG
NONE
OsAffx.29536.3.S1_x_at--222--9357Chr10:20239365..20239389 (25 bp)
TCGGGCCTAGCCGAAACGGTACGCG
NONE
OsAffx.29536.3.S1_x_at--699--2571Chr10:20239379..20239403 (25 bp)
AACGGTACGCGACCGTGATGCGCAC
NONE
OsAffx.29536.3.S1_x_at--308--8052Chr10:20239567..20239591 (25 bp)
GGAGCGAAAGGAGCCGACGGTGGTG
LOC_Os10g38520
OsAffx.29536.3.S1_x_at--731--7573Chr10:20239640..20239664 (25 bp)
GGGCAACGGGAGTTCGATTCAAAGG
LOC_Os10g38520
OsAffx.29536.3.S1_x_at--12--7674Chr10:20239688..20239712 (25 bp)
GGGATCCCGTTTGTGGCGTCGGATG
LOC_Os10g38520
OsAffx.29536.3.S1_x_at--805--4371Chr07:206735..206759 (25 bp)
CCAAGGAGGGCTGGTGACAAGCGGC
LOC_Os07g01330
Target Sequence 
TGGCTAACCGGAGCGAGCGGCTACCGCCGGCAGCTAGAGGAGCTTGTCGGATCGGGGATGTGGTCGCGCAAGGGAAGGGA
CAAGGGGGCGCAAACTCGGGCCTAGCCGAAACGGTACGCGACCGTGATGCGCACGCGGNGACGCGGGACCCGATGGTCAC
CGGCGANGCACGCGCGGCGTTGTTATGNGGCGGCGGAAACGGCGACACGACGNGGAGACAAAGGAGAAGGCCGGCGGCCT
TGGGGCAGCCAGGGGGAGGTCAAGGGGATCCCCGGGAGCGTGGNAGCGAGAGGAATCGGAGCGAAAGGAGCCGACGGTGG
TGGATTGCGGCGGCGGCCATCNCCGGCGGAGAGAAGNGGAAATCTCNCCGGGGCAACGGGAGTTCGATTCAAAGGGGTGG
GAGCATCTCTAGGACTNAGGGATCCCGTTTGTGGCGTCGGATGGGGCGGAAGAGCACCAAGGAGGGCTGGTGACAAGCGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29536.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis