Browse Element(s) Details


Os.23988.1.A1_at

Description gb:CA761011
DB_XREF= gi:25805050
DB_XREF=BR060001000E07.ab1
CLONE=BR060001000E07.ab1
TID=Os.23988.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23988 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0134010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01310Os.40446.1.S1_at9/117+189343..194728Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g01320Os.6121.1.S1_at11/117+194377..198122expressed protein
LOC_Os07g01330OsAffx.29536.3.S1_x_at4/117+206625..207089transposon protein, putative, unclassified
LOC_Os07g01340Os.30269.1.S1_at11/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g01340Os.23988.1.A1_at10/117+212077..217842oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g01350NANA7+224327..224677hypothetical protein
LOC_Os07g01360Os.51841.1.S1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.45902.1.A1_x_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01360Os.10263.1.S1_at1/117+228887..231134Zinc knuckle family protein
LOC_Os07g01370Os.10287.1.S1_at11/117+234225..235743Peroxidase 1 precursor, putative, expressed
LOC_Os07g01380OsAffx.16028.1.S1_x_at11/117+237814..239244Peroxidase 1 precursor, putative
LOC_Os07g01390Os.26886.3.S1_x_at7/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390Os.26886.1.S1_x_at5/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g01390OsAffx.16244.1.S1_x_at1/117+240649..246921transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009686biological_processgibberellic acid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23988.1.A1_at--538--3731Chr07:214932..214957 (25 bp)
CTACATGGTGATGGTAGTATCCCAT
LOC_Os07g01340
Os.23988.1.A1_at--840--7851Chr07:214945..214969 (25 bp)
GGTAGTATCCCATATGCATGCATAT
LOC_Os07g01340
Os.23988.1.A1_at--282--3532Chr10:22133506..22133751 (25 bp)
CATGCATATGCTTGGTGAATCTCAA
NONE
Os.23988.1.A1_at--466--4931Chr07:214970..214994 (25 bp)
GCTTGGTGAATCTCAATGTAGATAT
LOC_Os07g01340
Os.23988.1.A1_at--221--7431Chr07:215015..215039 (25 bp)
GTGTATTATATTCGATCGTACGTGA
LOC_Os07g01340
Os.23988.1.A1_at--493--9391Chr07:215030..215054 (25 bp)
TCGTACGTGATCACATGAACGCATG
LOC_Os07g01340
Os.23988.1.A1_at--549--3451Chr07:215043..215067 (25 bp)
CATGAACGCATGACAAGGTATTATT
LOC_Os07g01340
Os.23988.1.A1_at--482--6891NONE
GTATAGATCAGCGAAAAGTCCAAAA
NONE
Os.23988.1.A1_at--69--1991Chr07:215103..215127 (25 bp)
ACTAGGACTAGTTAACGCATGTAAC
LOC_Os07g01340
Os.23988.1.A1_at--898--3431Chr07:215120..215144 (25 bp)
CATGTAACAATGCAAGTAGTCGTCT
LOC_Os07g01340
Os.23988.1.A1_at--1123--651Chr07:215129..215153 (25 bp)
ATGCAAGTAGTCGTCTGCTTGGGAG
LOC_Os07g01340
Target Sequence 
CTACATGGTGATGGTAGTATCCCATATGCATGCATATGCTTGGTGAATCTCAATGTAGATATATATAAGTTGGTAATTAA
ATGTGTATTATATTCGATCGTACGTGATCACATGAACGCATGACAAGGTATTATTGATCNCTAGTATAGATCAGCGAAAA
GTCCAAAAAAACTAGGACTAGTTAACGCATGTAACAATGCAAGTAGTCGTCTGCTTGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23988.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis