Browse Element(s) Details


Os.45902.1.A1_x_at

Description gb:CB676441
DB_XREF= gi:29680166
DB_XREF=OSJNEe12L07.r
CLONE=OSJNEe12L07
TID=Os.45902.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.45902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683B11.20 (P0683B11.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1743011/11NB-ARC domain containing protein, expressed
LOC_Os09g131105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g349104/11expressed protein
LOC_Os07g161904/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g138804/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g163904/11Zinc knuckle family protein
LOC_Os01g223204/11transposon protein, putative, unclassified
LOC_Os10g229404/11hypothetical protein
LOC_Os05g116904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g388704/11hypothetical protein
LOC_Os04g037104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g214104/11BED zinc finger family protein
LOC_Os08g059204/11retrotransposon protein, putative, unclassified
LOC_Os08g274103/11Zinc knuckle family protein
LOC_Os07g299203/11hypothetical protein
LOC_Os08g406502/11Protein kinase domain containing protein
LOC_Os07g122702/11hypothetical protein
LOC_Os05g144002/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g306702/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g305502/11hypothetical protein
LOC_Os10g260402/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g198302/11hypothetical protein
LOC_Os07g124202/11hypothetical protein
LOC_Os04g261802/11hypothetical protein
LOC_Os12g288902/11hypothetical protein
LOC_Os02g530901/11hypothetical protein
LOC_Os04g108801/11hypothetical protein
LOC_Os11g043001/11phosphoglycerate mutase family protein, expressed
LOC_Os05g199001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g400101/11retrotransposon protein, putative, unclassified
LOC_Os08g302801/11hypothetical protein
LOC_Os04g051041/11hypothetical protein
LOC_Os07g013601/11Zinc knuckle family protein
LOC_Os02g402501/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g455901/11retrotransposon protein, putative, unclassified
LOC_Os07g272901/11hypothetical protein
LOC_Os06g285501/11Isoflavone reductase homolog, putative, expressed
LOC_Os09g209501/11Zinc knuckle family protein
LOC_Os04g288001/11hypothetical protein
LOC_Os05g109701/11Zinc knuckle family protein
LOC_Os02g214001/11retrotransposon protein, putative, unclassified
LOC_Os10g058701/11hypothetical protein
LOC_Os03g191041/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g435501/11hypothetical protein
LOC_Os01g288821/11hypothetical protein
LOC_Os03g410101/11hypothetical protein
LOC_Os08g403201/11hypothetical protein
LOC_Os12g261001/11hypothetical protein
LOC_Os02g303301/11hypothetical protein
LOC_Os03g558601/11retrotransposon protein, putative, unclassified
LOC_Os12g181901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g412101/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17400NANA12+9971351..9971878hypothetical protein
LOC_Os12g17410NANA12+9977964..9982060NB-ARC domain containing protein
LOC_Os12g17420NANA12+9983692..9985325disease resistance protein RPM1 homolog, putative
LOC_Os12g17430Os.45902.1.A1_x_at11/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.45902.1.A1_at10/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.27538.1.S1_at9/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.10222.1.S1_x_at2/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.51841.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.727.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.56372.1.S1_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17440OsAffx.19717.1.S1_at11/1112+9996211..9996546hypothetical protein
LOC_Os12g17450OsAffx.435.1.S1_at1/1112+9997186..10001032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17460NANA12+10001210..10002253retrotransposon protein, putative, unclassified
LOC_Os12g17470OsAffx.31777.2.S1_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.31777.2.S1_x_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.1.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.5.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17480NANA12+10007910..10011703NB-ARC domain containing protein
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0008152biological_processmetabolism
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0003824molecular_functioncatalytic activity
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45902.1.A1_x_at--689--10293Chr12:9991790..9991814 (25 bp)
TTTCGTGATTATGACTTCTAGGTGG
LOC_Os12g17430
Os.45902.1.A1_x_at--760--3992Chr12:9991787..9991811 (25 bp)
CGTGATTATGACTTCTAGGTGGATA
LOC_Os12g17430
Os.45902.1.A1_x_at--537--6552Chr12:9991784..9991808 (25 bp)
GATTATGACTTCTAGGTGGATACTA
LOC_Os12g17430
Os.45902.1.A1_x_at--802--5672Chr12:9991778..9991802 (25 bp)
GACTTCTAGGTGGATACTATACGTA
LOC_Os12g17430
Os.45902.1.A1_x_at--734--75110Chr12:15227407..15227431 (25 bp)
ATGTAATACTATTGTTTGCTGCTAA
NONE
Os.45902.1.A1_x_at--462--203101Chr12:15227414..15227438 (25 bp)
ACTATTGTTTGCTGCTAATGAGTCA
NONE
Os.45902.1.A1_x_at--343--685108Chr12:15227420..15227444 (25 bp)
GTTTGCTGCTAATGAGTCAAGTTGG
NONE
Os.45902.1.A1_x_at--266--877129Chr12:15227475..15227498 (24 bp)
TGTTTGTTCCATGTGTAGGTGACTT
NONE
Os.45902.1.A1_x_at--893--43315Chr12:15953775..15953798 (24 bp)
CCATGTGTAGGTGACTTGATGTCTC
NONE
Os.45902.1.A1_x_at--1049--21190Chr12:1089454..1089478 (25 bp)
ATTTGGTACGATTGGTTATGTAAAG
NONE
Os.45902.1.A1_x_at--432--781221Chr12:6567349..6567373 (25 bp)
TGTACTAGAGGGTTTCCTAAGGTGT
NONE
Target Sequence 
TTTCGTGATTATGACTTCTAGGTGGATACTATACGTATGTAATACTATTGTTTGCTGCTAATGAGTCAAGTTGGAGATAG
CTTGGTCTCGGAATATGGTTTCTTTGTTTGTTCCATGTGTAGGTGACTTGATGTCTCGGGAGAGTATTTGCGGTGATGGA
CCGGGAGTCGGCTTGGGGATAAGANGACGTCNGTGGTGGTCAGAGATCATGCGGGATACTTAGGCTAGANTTGATGCACG
TGGTTGATGGAGATTCCATATGGCATANGATGGAGGTATTGTGTGCGTATGGGATGCGGAGTCGAATTTGGAAGGAGTCC
AAATTTGGTACGATTGGTTATGTAAAGTTTNTTTCTTGTACTAGAGGGTTTCCTAAGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45902.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis