Browse Element(s) Details


OsAffx.19717.1.S1_at

Description tigr:9640.m01707
TID=OsAffx.19717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17400NANA12+9971351..9971878hypothetical protein
LOC_Os12g17410NANA12+9977964..9982060NB-ARC domain containing protein
LOC_Os12g17420NANA12+9983692..9985325disease resistance protein RPM1 homolog, putative
LOC_Os12g17430Os.45902.1.A1_x_at11/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.45902.1.A1_at10/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.27538.1.S1_at9/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.10222.1.S1_x_at2/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.51841.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.727.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.56372.1.S1_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17440OsAffx.19717.1.S1_at11/1112+9996211..9996546hypothetical protein
LOC_Os12g17450OsAffx.435.1.S1_at1/1112+9997186..10001032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17460NANA12+10001210..10002253retrotransposon protein, putative, unclassified
LOC_Os12g17470OsAffx.31777.2.S1_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.31777.2.S1_x_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.1.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.5.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17480NANA12+10007910..10011703NB-ARC domain containing protein
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein
LOC_Os12g17500OsAffx.31779.1.S1_at11/1112+10019361..10020049hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19717.1.S1_at--449--5171Chr12:9996244..9996268 (25 bp)
GCAAGACATAAGGAGAGTGAAACAA
LOC_Os12g17440
OsAffx.19717.1.S1_at--1092--1351Chr12:9996297..9996321 (25 bp)
AGAGCCTTCGGCACTCGGCGTCGAA
LOC_Os12g17440
OsAffx.19717.1.S1_at--648--4431Chr12:9996300..9996324 (25 bp)
GCCTTCGGCACTCGGCGTCGAAGCT
LOC_Os12g17440
OsAffx.19717.1.S1_at--1132--1611Chr12:9996321..9996345 (25 bp)
AGCTGGTGTGGTACCATCGACGTCG
LOC_Os12g17440
OsAffx.19717.1.S1_at--350--7591Chr12:9996391..9996415 (25 bp)
GGGCAGGCGCCGAATATGGTCGATG
LOC_Os12g17440
OsAffx.19717.1.S1_at--6--4171Chr12:9996398..9996422 (25 bp)
CGCCGAATATGGTCGATGCGGCGAA
LOC_Os12g17440
OsAffx.19717.1.S1_at--773--8391Chr12:9996441..9996465 (25 bp)
GGCGCTCCAGACTAGGGCAGAAATC
LOC_Os12g17440
OsAffx.19717.1.S1_at--973--4131Chr12:9996443..9996467 (25 bp)
CGCTCCAGACTAGGGCAGAAATCCT
LOC_Os12g17440
OsAffx.19717.1.S1_at--268--10311Chr12:9996467..9996491 (25 bp)
TTTCGACAAGTCAACTAGCGGCGCC
LOC_Os12g17440
OsAffx.19717.1.S1_at--797--10631Chr12:9996468..9996492 (25 bp)
TTCGACAAGTCAACTAGCGGCGCCC
LOC_Os12g17440
OsAffx.19717.1.S1_at--545--5611Chr12:9996471..9996495 (25 bp)
GACAAGTCAACTAGCGGCGCCCCAA
LOC_Os12g17440
Target Sequence 
GCAAGACATAAGGAGAGTGAAACAAGAGTGGAGATGGCAGCCAAAGAGGGAGCAGAGCCTTCGGCACTCGGCGTCGAAGC
TGGTGTGGTACCATCGACGTCGGCCCCTACGCCGCAACCACTACCTTCGGCTCCTGCCGCTTCAGCGGGGCAGGCGCCGA
ATATGGTCGATGCGGCGAAGGCGGCAGCGGCAGCAAGGGCGCTCCAGACTAGGGCAGAAATCCTTTCGACAAGTCAACTA
GCGGCGCCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis