Browse Element(s) Details


Os.51841.1.S1_x_at

Description gb:AK064001.1
DB_XREF= gi:32974019
TID=Os.51841.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F09, full insert sequence.
FL= gb:AK064001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1806411/11expressed protein
LOC_Os04g062803/11hypothetical protein
LOC_Os10g026001/11Zinc knuckle family protein
LOC_Os06g224701/11hypothetical protein
LOC_Os04g185801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g187501/11hypothetical protein
LOC_Os02g402501/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g305501/11hypothetical protein
LOC_Os09g040401/11hypothetical protein
LOC_Os10g269601/11Zinc knuckle family protein
LOC_Os05g401001/11hypothetical protein
LOC_Os08g302801/11hypothetical protein
LOC_Os09g203201/11DnaJ domain containing protein
LOC_Os09g209501/11Zinc knuckle family protein
LOC_Os06g147601/11hypothetical protein
LOC_Os11g043001/11phosphoglycerate mutase family protein, expressed
LOC_Os12g162001/11glutathione synthetase, putative, expressed
LOC_Os02g303301/11hypothetical protein
LOC_Os05g109701/11Zinc knuckle family protein
LOC_Os02g530901/11hypothetical protein
LOC_Os12g174301/11NB-ARC domain containing protein, expressed
LOC_Os12g398001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g119301/11hypothetical protein
LOC_Os11g299401/11hypothetical protein
LOC_Os04g288001/11hypothetical protein
LOC_Os04g062901/11Zinc knuckle family protein
LOC_Os05g199001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g187201/11Zinc knuckle family protein
LOC_Os04g051041/11hypothetical protein
LOC_Os07g272901/11hypothetical protein
LOC_Os07g013601/11Zinc knuckle family protein
LOC_Os05g314501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18020NANA2+10457739..10458587retrotransposon protein, putative, unclassified
LOC_Os02g18030OsAffx.22947.2.S1_x_at2/112+10459103..10459894retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18030OsAffx.447.1.S1_at1/112+10459103..10459894retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18030OsAffx.22947.3.S1_x_at1/112+10459103..10459894retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18030OsAffx.22947.1.S1_x_at1/112+10459103..10459894retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18040Os.45173.1.S1_x_at4/112+10464527..10476665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g18040OsAffx.20877.1.S1_at1/112+10464527..10476665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g18050NANA2+10479058..10480447hypothetical protein
LOC_Os02g18060OsAffx.20650.1.S1_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.46012.2.S1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.27088.1.A1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18060Os.46012.3.S1_x_at1/112+10480997..10482329retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18064Os.51841.1.S1_x_at11/112+10483366..10488682expressed protein
LOC_Os02g18064Os.54691.1.S1_x_at11/112+10483366..10488682expressed protein
LOC_Os02g18064Os.31929.2.S1_x_at2/112+10483366..10488682expressed protein
LOC_Os02g18064OsAffx.10222.1.S1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18064Os.23706.1.A1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18064Os.46012.3.S1_x_at1/112+10483366..10488682expressed protein
LOC_Os02g18070OsAffx.2660.1.S1_at11/112+10490444..10496411NB-ARC domain containing protein, expressed
LOC_Os02g18080OsAffx.24300.1.S1_at11/112+10504701..10508396NB-ARC domain containing protein, expressed
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006750biological_processglutathione biosynthesis
GO:0006952biological_processdefense response
GO:0008152biological_processmetabolism
GO:0009626biological_processhypersensitive response
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0003824molecular_functioncatalytic activity
GO:0004363molecular_functionglutathione synthase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51841.1.S1_x_at--822--82910Chr12:21867729..21868005 (25 bp)
GGCTTCTAGATGGATATTATGCGTA
NONE
Os.51841.1.S1_x_at--827--3731Chr02:10488135..10488159 (25 bp)
CTAACAATGAGCCAAGTTGAGGATA
LOC_Os02g18064
Os.51841.1.S1_x_at--663--4374Chr11:20188492..20188515 (24 bp)
CCAAGTTGAGGATAGCTTGGTCTCG
NONE
Os.51841.1.S1_x_at--377--67321Chr12:24541845..24541869 (25 bp)
GTTCTATGTGTAGGTGACTCGAGAT
NONE
Os.51841.1.S1_x_at--1097--6798Chr11:20192671..20192690 (20 bp)
GTTTTCTAGGGTGATTAGGACTTCT
NONE
Os.51841.1.S1_x_at--1095--104317Chr12:24542151..24542175 (25 bp)
TTAGGCTGCCTACCTTGGGTATAAA
NONE
Os.51841.1.S1_x_at--483--5892Chr02:10488529..10488553 (25 bp)
GAGCGTGAGGCTTTCTAGTATTGCT
LOC_Os02g18064
Os.51841.1.S1_x_at--1092--10313Chr07:16641154..16641173 (20 bp)
TTTCTAGTATTGCTTTTGAGAGCAA
NONE
Os.51841.1.S1_x_at--950--6051Chr02:10488567..10488591 (25 bp)
GAGTTGATAGTCGAGTTAGAGTTTC
LOC_Os02g18064
Os.51841.1.S1_x_at--532--403131Chr12:19670885..19670909 (25 bp)
CGAGTTTAGTCGAGATTTTTGTAAG
NONE
Os.51841.1.S1_x_at--688--8731Chr02:10488610..10488634 (25 bp)
TGTAAGGAGTGCTATTAGTGCACTT
LOC_Os02g18064
Target Sequence 
GGCTTCTAGATGGATATTATGCGTATGTAATACTGTTGTTTGCTAACAATGAGCCAAGTTGAGGATAGCTTGGTCTCGGA
ATATGGTTTCTTTATTTGTTCTATGTGTAGGTGACTCGAGATGTCGGGAGAGTATTTGCGGTGATGGACCGGGAGTCGGC
TTGGGGATAAAACGACGTCCATGGTGGTCAGAGATCATGTGGGATACTAAGGCTAGAGTTCAATGCACGTGGTTGGTGAA
GATTCCATATGACATACGATGGAGGTATTGTGTGCGTATGGGATGCGGAGTCGAATTTCAAAGGAGTCCAAATTTGGTAT
GATTGGTTATGTAAAGTTTGTTTCTTGTACTAGAGGGTTTTCTAGGGTGATTAGGACTTCTAGTATGAGTTTGGTTCGTG
GCTTTAGGCTGCCTACCTTGGGTATAAATAGAGAGGGAGCGTGAGGCTTTCTAGTATTGCTTTTGAGAGCAATTGAGTTG
ATAGTCGAGTTAGAGTTTCGAGTTTAGTCGAGATTTTTGTAAGGAGTGCTATTAGTGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51841.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis