Browse Element(s) Details


Os.31929.2.S1_x_at

Description gb:AU082313
DB_XREF= gi:6850194
DB_XREF=AU082313
CLONE=E2215
TID=Os.31929.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.31929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1168H06.16 (B1168H06.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g121104/11retrotransposon protein, putative, unclassified
LOC_Os08g121403/11hypothetical protein
LOC_Os10g119543/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g180642/11expressed protein
LOC_Os03g393101/11hypothetical protein
LOC_Os08g268001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12070NANA8+7104848..7106203transposon protein, putative, unclassified
LOC_Os08g12080NANA8+7108463..7114370retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12090Os.53142.1.S1_at3/118+7115879..7117306transposon protein, putative, unclassified
LOC_Os08g12090Os.47114.1.S1_x_at2/118+7115879..7117306transposon protein, putative, unclassified
LOC_Os08g12090Os.46314.2.S1_x_at2/118+7115879..7117306transposon protein, putative, unclassified
LOC_Os08g12100NANA8+7118963..7119559hypothetical protein
LOC_Os08g12110Os.24831.3.S1_s_at11/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.24831.1.S1_x_at10/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.24831.3.S1_x_at9/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.31929.3.S1_x_at8/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.31929.2.S1_x_at4/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.24831.4.S1_x_at3/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110Os.53142.1.S1_at3/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110OsAffx.1651.1.S1_x_at1/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12110OsAffx.1651.1.S1_at1/118+7121726..7126748retrotransposon protein, putative, unclassified
LOC_Os08g12120OsAffx.1383.1.S1_at1/118+7128741..7133542retrotransposon protein, putative, unclassified
LOC_Os08g12130OsAffx.22699.1.S1_x_at4/118+7137046..7143203retrotransposon protein, putative, unclassified, expressed
LOC_Os08g12140Os.31929.3.S1_x_at9/118+7144239..7151460hypothetical protein
LOC_Os08g12140Os.31929.2.S1_x_at3/118+7144239..7151460hypothetical protein
LOC_Os08g12140Os.53142.1.S1_at2/118+7144239..7151460hypothetical protein
LOC_Os08g12140OsAffx.1651.1.S1_at1/118+7144239..7151460hypothetical protein
LOC_Os08g12140OsAffx.1651.1.S1_x_at1/118+7144239..7151460hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31929.2.S1_x_at--523--9416Chr06:315942..315966 (25 bp)
TCGTCGGCTGCCCTCATCGTCTCCT
NONE
Os.31929.2.S1_x_at--360--3792Chr04:17612819..17613320 (25 bp)
CTCGTCGCGTGGTGGCTTGTAGCTT
NONE
Os.31929.2.S1_x_at--915--465293Chr12:5924927..5925331 (25 bp)
GCGTGGTGGCTTGTAGCTTTGCTTG
NONE
Os.31929.2.S1_x_at--717--1059122Chr12:7957386..7957410 (25 bp)
TTCGCGTAGCTTTCGTCGTTCCGGA
NONE
Os.31929.2.S1_x_at--628--463119Chr12:7957389..7957413 (25 bp)
GCGTAGCTTTCGTCGTTCCGGAGGT
NONE
Os.31929.2.S1_x_at--745--925223Chr12:7957401..7957425 (25 bp)
TCGTTCCGGAGGTTCCCGAAGCGTG
NONE
Os.31929.2.S1_x_at--510--541156Chr12:7957418..7957442 (25 bp)
GAAGCGTGGTTCGTGGTCGTCGCCG
NONE
Os.31929.2.S1_x_at--1082--841256Chr12:5925405..5925424 (20 bp)
GGCCGTTCTCTCTGAGCAAGTAAGA
NONE
Os.31929.2.S1_x_at--291--4511Chr10:12034519..12034948 (25 bp)
GCCGTTCTCTCTGAGCAAGTAAGAG
NONE
Os.31929.2.S1_x_at--1040--4231NONE
CCGTTCTCTCTGAGCAAGTAAGAGA
NONE
Os.31929.2.S1_x_at--605--4031NONE
CGTTCTCTCTGAGCAAGTAAGAGAA
NONE
Target Sequence 
TCGTCGGCTGCCCTCATCGTCTCCTCGCCGGCCCCGGTCGTCGTCGTCGTCGTCCTCTCGTCGTTCCCGGTCGTCNGNGG
CGTTCGTCCCTCCGTCNANCNGTTCTCGTCCGTCNTCNGNGNTTCGTCNAGNGTNCNGCTGNAGCCCCCGTCNTCGTCTT
CGTCCTCGNCTCCGNGTCGTCAAGCCTCGTGCCGGCCGCGTCTCGCCNTCGTCNAAGGATCGCCGCCGAAGTCGTTCCCT
CGCNNTNNNNNNTCCNNNNGNNNNCGCCNNGNNNNTTCGTCGTTGTCGTTCCCNCGCCTCGTCGCGTGGTGGCTTGTAGC
TTTGCTTGTGTNNTTCGCGTAGCTTTCGTCGTTCCGGAGGTTCCCGAAGCGTGGTTCGTGGTCGTCGCCGAAGGTTCGGA
AGGCCGTTCTCTCTGAGCAAGTAAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31929.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis