Browse Element(s) Details


OsAffx.1651.1.S1_at

Description gb:NM_184680.1
DB_XREF= gi:34896449
TID=OsAffx.1651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0077G22.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g101204/11retrotransposon protein, putative, unclassified
LOC_Os11g228401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g121101/11retrotransposon protein, putative, unclassified
LOC_Os02g196701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g121401/11hypothetical protein
LOC_Os08g225701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g164101/11transposon protein, putative, unclassified
LOC_Os12g139901/11retrotransposon protein, putative, unclassified
LOC_Os03g263291/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10070OsAffx.22699.1.S1_x_at3/114+5417482..5421382retrotransposon protein, putative, unclassified
LOC_Os04g10080OsAffx.1196.1.S1_at2/114+5424186..5425436hypothetical protein
LOC_Os04g10080OsAffx.1196.1.S1_x_at1/114+5424186..5425436hypothetical protein
LOC_Os04g10090NANA4+5426303..5426749hypothetical protein
LOC_Os04g10100NANA4+5430295..5437020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10110NANA4+5440620..5441805retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_at4/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_x_at3/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120Os.51491.1.S1_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.8201.1.S1_x_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10130OsAffx.3761.1.S1_x_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10130OsAffx.3761.1.S1_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10140OsAffx.3762.1.S1_at11/114+5459004..5459727hypothetical protein
LOC_Os04g10140Os.37711.3.S1_x_at1/114+5459004..5459727hypothetical protein
LOC_Os04g10150Os.57362.1.S1_at10/114+5463453..5464267expressed protein
LOC_Os04g10160Os.16305.1.S1_at11/114+5464874..5466769Cytochrome P450 CYP99A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1651.1.S1_at--447--6271Chr03:19866460..19866484 (25 bp)
GATGTAGCCGCCTCTGGGCGCACCG
NONE
OsAffx.1651.1.S1_at--541--7551Chr03:19866445..19866469 (25 bp)
GGGCGCACCGTGTGGCCACCGCGTG
NONE
OsAffx.1651.1.S1_at--356--331384Chr12:5649952..5650075 (25 bp)
CACATGTCTAGTGGGCTACACGAGC
NONE
OsAffx.1651.1.S1_at--602--90714Chr11:15428475..15428499 (25 bp)
TGCTAGGGGCTCAACCTTGGTTACC
NONE
OsAffx.1651.1.S1_at--71--10834Chr04:5443971..5443995 (25 bp)
TTGGTTACCTGTCTCGGGAATCCTG
LOC_Os04g10120
OsAffx.1651.1.S1_at--1050--1753Chr04:5443977..5444001 (25 bp)
ACCTGTCTCGGGAATCCTGGCCGTA
LOC_Os04g10120
OsAffx.1651.1.S1_at--186--9493Chr04:5443982..5444006 (25 bp)
TCTCGGGAATCCTGGCCGTAGCCAG
LOC_Os04g10120
OsAffx.1651.1.S1_at--281--7891NONE
GGTTGGGTCGGGACACACACAACAT
NONE
OsAffx.1651.1.S1_at--987--7691Chr03:19864319..19864338 (20 bp)
GGGTCGGGACACACACAACATGGCA
NONE
OsAffx.1651.1.S1_at--760--4332Chr04:13678339..13678362 (24 bp)
CCAGATCAAGTGGAGTACCTCCATG
NONE
OsAffx.1651.1.S1_at--926--6071Chr03:19864017..19864115 (25 bp)
GAGTACCTCCATGTCCAAACGGGGG
NONE
Target Sequence 
GATGTAGCCGCCTCTGGGCGCACCGTGTGGCCACCGCGTGGGGCCTGGCCGTCAGCCCCCCGTGCCCTCGGGTGCGGCTG
ACGTGTGGGGCCCCCGGCGCCGGCTGCATCTCGGCCACTATAAGGACCGGTCTTCGGGCCTCTGTTGCAAAGCACTACCG
TACTTCCACATGTCTAGTGGGCTACACGAGCTGCGGCCCGGTAGTCGAGATGTCATGGCACATGGCCGGTGTCCTGCTGC
TAGGGGCTCAACCTTGGTTACCTGTCTCGGGAATCCTGGCCGTAGCCAGGGTTGGGTCGGGACACACACAACATGGCAAG
GAACGAACGAGAAAGTTCATCATCCTCAACACCCGTGCAGATTATATGAGGCAGGTTGGGAACCAACTGGGGATGCACTC
GGATGGACCCAAGCTCCACGCCACAACATCGGTGTCTCAAGCTGGGCAAGTGCCAGTGAGGACCGGTGGCATGCGCCTCA
TGACATATAGTGGGGGGACAACCAACCTCCCAGATCAAGTGGAGTACCTCCATGTCCAAACGGGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis