Browse Element(s) Details


OsAffx.3761.1.S1_at

Description tigr:9632.m00885
TID=OsAffx.3761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1013011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10080OsAffx.1196.1.S1_at2/114+5424186..5425436hypothetical protein
LOC_Os04g10080OsAffx.1196.1.S1_x_at1/114+5424186..5425436hypothetical protein
LOC_Os04g10090NANA4+5426303..5426749hypothetical protein
LOC_Os04g10100NANA4+5430295..5437020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10110NANA4+5440620..5441805retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_at4/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_x_at3/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120Os.51491.1.S1_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.8201.1.S1_x_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10130OsAffx.3761.1.S1_x_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10130OsAffx.3761.1.S1_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10140OsAffx.3762.1.S1_at11/114+5459004..5459727hypothetical protein
LOC_Os04g10140Os.37711.3.S1_x_at1/114+5459004..5459727hypothetical protein
LOC_Os04g10150Os.57362.1.S1_at10/114+5463453..5464267expressed protein
LOC_Os04g10160Os.16305.1.S1_at11/114+5464874..5466769Cytochrome P450 CYP99A1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3761.1.S1_at--927--5311Chr04:5448853..5448877 (25 bp)
GAAGACCAAGGCCAAAAAGCAATTG
LOC_Os04g10130
OsAffx.3761.1.S1_at--828--871Chr04:5448845..5448869 (25 bp)
AGGCCAAAAAGCAATTGATCCATCG
LOC_Os04g10130
OsAffx.3761.1.S1_at--826--4151Chr04:5447992..5448016 (25 bp)
CCCAGATGAACTAGTCAATGCCCCT
LOC_Os04g10130
OsAffx.3761.1.S1_at--794--3411Chr04:5447990..5448014 (25 bp)
CAGATGAACTAGTCAATGCCCCTAC
LOC_Os04g10130
OsAffx.3761.1.S1_at--229--1311Chr04:5447989..5448013 (25 bp)
AGATGAACTAGTCAATGCCCCTACT
LOC_Os04g10130
OsAffx.3761.1.S1_at--830--6311Chr04:5447988..5448012 (25 bp)
GATGAACTAGTCAATGCCCCTACTC
LOC_Os04g10130
OsAffx.3761.1.S1_at--470--8971Chr04:5447986..5448010 (25 bp)
TGAACTAGTCAATGCCCCTACTCCG
LOC_Os04g10130
OsAffx.3761.1.S1_at--992--9271Chr04:5447965..5447989 (25 bp)
TCCGGCCGTTTACCTCGAGCAATAT
LOC_Os04g10130
OsAffx.3761.1.S1_at--500--4511Chr04:5447907..5447931 (25 bp)
GCCGAGCATCGGGAGCGCAAGAACA
LOC_Os04g10130
OsAffx.3761.1.S1_at--703--4071Chr04:5447905..5447929 (25 bp)
CGAGCATCGGGAGCGCAAGAACATT
LOC_Os04g10130
OsAffx.3761.1.S1_at--1028--1531Chr04:5447903..5447927 (25 bp)
AGCATCGGGAGCGCAAGAACATTGA
LOC_Os04g10130
Target Sequence 
GAAGACCAAGGCCAAAAAGCAATTGATCCATCGGCTCTGGCTCTTAAGAAGAAGGCCAAAAAGCATAAACCCAAGCCAGC
CGATGATCTGCCTACCCTAGATCCATCTATCGAGCAAGCTTTGGATGAAGAGGAAATTGAAGAGGATGCTGACAAAGCTG
CAGCCGAATTGCAGAAGAAGATCGCTGTGAAGAAGAAATCGGCAGCAACAACACTTAAACCAGCTCCACCAGTTTTAGTC
GATCTGTTCTCCTTTGATATCAAAGATTATTTTGATGAAGAGACAGAAGATGATACCACCAACAAAGCTCTAGCTCCCTT
GACCGATGATGTGAAGAAAATACTTGAAGACATTTCTCGTCGGCTAGAGGCATCATCACTAGATAGCTTGGTAGTAGACT
ATGGGTCGATCAGAACTCGGCTACATAAAGTTCAAGCTCTTATCCCAGATGAACTAGTCAATGCCCCTACTCCGGCCGTT
TACCTCGAGCAATATCAATTCAAGCTGGAGAATGCCAAGCTAAGACTAGCCGAGCATCGGGAGCGCAAGAACATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis