Browse Element(s) Details


Os.24831.4.S1_x_at

Description gb:NM_195641.1
DB_XREF= gi:37532641
TID=Os.24831.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1014_G12.17 (OJ1014_G12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053D03.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1721011/11retrotransposon protein, putative, unclassified
LOC_Os04g539007/11retrotransposon protein, putative, unclassified
LOC_Os04g051805/11retrotransposon protein, putative, unclassified
LOC_Os03g263294/11retrotransposon protein, putative, unclassified
LOC_Os05g263004/11retrotransposon protein, putative, unclassified
LOC_Os09g090004/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g247204/11retrotransposon protein, putative, unclassified
LOC_Os09g090204/11retrotransposon protein, putative, unclassified
LOC_Os03g232304/11retrotransposon protein, putative, unclassified
LOC_Os05g082703/11retrotransposon protein, putative, unclassified
LOC_Os04g052403/11retrotransposon protein, putative, unclassified
LOC_Os06g317503/11retrotransposon protein, putative, unclassified
LOC_Os12g180503/11retrotransposon protein, putative, unclassified
LOC_Os08g121103/11retrotransposon protein, putative, unclassified
LOC_Os05g180303/11retrotransposon protein, putative, unclassified
LOC_Os12g169803/11retrotransposon protein, putative, unclassified
LOC_Os04g140503/11retrotransposon protein, putative, unclassified
LOC_Os07g149602/11retrotransposon protein, putative, unclassified
LOC_Os04g048302/11retrotransposon protein, putative, unclassified
LOC_Os05g172402/11retrotransposon protein, putative, unclassified
LOC_Os04g194102/11retrotransposon protein, putative, unclassified
LOC_Os12g268202/11retrotransposon protein, putative, unclassified
LOC_Os07g258502/11retrotransposon protein, putative, unclassified
LOC_Os04g381102/11retrotransposon protein, putative, unclassified
LOC_Os12g111802/11retrotransposon protein, putative, unclassified
LOC_Os05g177202/11retrotransposon protein, putative, unclassified
LOC_Os05g206502/11retrotransposon protein, putative, unclassified
LOC_Os10g031502/11retrotransposon protein, putative, unclassified
LOC_Os01g215002/11retrotransposon protein, putative, unclassified
LOC_Os12g140102/11retrotransposon protein, putative, unclassified
LOC_Os09g131402/11retrotransposon protein, putative, unclassified
LOC_Os06g323902/11retrotransposon protein, putative, unclassified
LOC_Os01g354002/11retrotransposon protein, putative, unclassified
LOC_Os03g265602/11retrotransposon protein, putative, unclassified
LOC_Os05g194302/11retrotransposon protein, putative, unclassified
LOC_Os05g172202/11retrotransposon protein, putative, unclassified
LOC_Os03g231402/11retrotransposon protein, putative, unclassified
LOC_Os05g177002/11retrotransposon protein, putative, unclassified
LOC_Os12g176302/11retrotransposon protein, putative, unclassified
LOC_Os10g200502/11retrotransposon protein, putative, unclassified
LOC_Os09g238402/11retrotransposon protein, putative, unclassified
LOC_Os03g329702/11retrotransposon protein, putative, unclassified
LOC_Os08g209522/11retrotransposon protein, putative, unclassified
LOC_Os06g320902/11retrotransposon protein, putative, unclassified
LOC_Os05g180602/11retrotransposon protein, putative, unclassified
LOC_Os09g045701/11retrotransposon protein, putative, unclassified
LOC_Os09g091901/11retrotransposon protein, putative, unclassified
LOC_Os04g064021/11retrotransposon protein, putative, unclassified
LOC_Os01g355301/11retrotransposon protein, putative, unclassified
LOC_Os04g138401/11retrotransposon protein, putative, unclassified
LOC_Os08g241001/11retrotransposon protein, putative, unclassified
LOC_Os09g011901/11retrotransposon protein, putative, unclassified
LOC_Os08g202601/11retrotransposon protein, putative, unclassified
LOC_Os10g187301/11retrotransposon protein, putative, unclassified
LOC_Os08g229401/11retrotransposon protein, putative, unclassified
LOC_Os07g478901/11retrotransposon protein, putative, unclassified
LOC_Os06g327701/11retrotransposon protein, putative, unclassified
LOC_Os08g245401/11retrotransposon protein, putative, unclassified
LOC_Os03g330501/11retrotransposon protein, putative, unclassified
LOC_Os02g238281/11retrotransposon protein, putative, unclassified
LOC_Os08g210501/11retrotransposon protein, putative, unclassified
LOC_Os10g242701/11retrotransposon protein, putative, unclassified
LOC_Os08g240801/11retrotransposon protein, putative, unclassified
LOC_Os08g452601/11retrotransposon protein, putative, unclassified
LOC_Os01g243801/11retrotransposon protein, putative, unclassified
LOC_Os05g390301/11retrotransposon protein, putative, unclassified
LOC_Os09g068701/11retrotransposon protein, putative, unclassified
LOC_Os06g187301/11retrotransposon protein, putative, unclassified
LOC_Os06g318501/11retrotransposon protein, putative, unclassified
LOC_Os12g255901/11retrotransposon protein, putative, unclassified
LOC_Os04g295001/11retrotransposon protein, putative, unclassified
LOC_Os09g139901/11retrotransposon protein, putative, unclassified
LOC_Os10g167801/11retrotransposon protein, putative, unclassified
LOC_Os12g338001/11retrotransposon protein, putative, unclassified
LOC_Os09g159201/11retrotransposon protein, putative, unclassified
LOC_Os05g208001/11retrotransposon protein, putative, unclassified
LOC_Os12g289301/11retrotransposon protein, putative, unclassified
LOC_Os02g143401/11retrotransposon protein, putative, unclassified
LOC_Os01g241801/11retrotransposon protein, putative, unclassified
LOC_Os05g175801/11retrotransposon protein, putative, unclassified
LOC_Os03g231901/11retrotransposon protein, putative, unclassified
LOC_Os12g181801/11retrotransposon protein, putative, unclassified
LOC_Os11g351701/11retrotransposon protein, putative, unclassified
LOC_Os06g172001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17170NANA10+8290453..8295944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17180NANA10+8298083..8299770retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17190NANA10+8302009..8302798hypothetical protein
LOC_Os10g17210Os.24831.4.S1_x_at11/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17210Os.24831.3.S1_s_at11/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17210Os.24831.1.S1_x_at6/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17210Os.24831.3.S1_x_at5/1110+8316033..8317960retrotransposon protein, putative, unclassified
LOC_Os10g17220OsAffx.6678.1.S1_at11/1110+8323252..8323716hypothetical protein
LOC_Os10g17230NANA10+8334208..8336965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17240NANA10+8340121..8340327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17250Os.10703.2.S1_x_at1/1110+8340644..8346742retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24831.4.S1_x_at--104--3698Chr10:8316460..8316484 (25 bp)
CTATTAGCAGCACCGAATGGCCTCC
LOC_Os10g17210
Os.24831.4.S1_x_at--361--2958Chr10:8316475..8316499 (25 bp)
AATGGCCTCCCGCAGGGATAACTAT
LOC_Os10g17210
Os.24831.4.S1_x_at--435--6471Chr10:8316491..8316515 (25 bp)
GATAACTATTCCCAGACGTCAAAGA
LOC_Os10g17210
Os.24831.4.S1_x_at--1042--6172Chr10:8316514..8316538 (25 bp)
GAGGAAATACCTTCCGAGGTGCCCG
LOC_Os10g17210
Os.24831.4.S1_x_at--716--6133Chr10:8316529..8316553 (25 bp)
GAGGTGCCCGACAGTTGACCCAGCA
LOC_Os10g17210
Os.24831.4.S1_x_at--2--1518Chr10:8316550..8316574 (25 bp)
AGCACCTTCTAAGCCATGGTGGCAG
LOC_Os10g17210
Os.24831.4.S1_x_at--571--52715Chr10:8316611..8316635 (25 bp)
GAATGATGAAGATGAGTCTCCCCGA
LOC_Os10g17210
Os.24831.4.S1_x_at--698--76539Chr12:9721619..9721757 (25 bp)
GGGAGTGTCCCACCCGCAAGCTAGT
LOC_Os12g16980
Os.24831.4.S1_x_at--347--51760Chr12:20359524..20359545 (22 bp)
GCAAGCTAGTCAGCTCCAACAGCAA
LOC_Os12g33800
Os.24831.4.S1_x_at--1147--90924Chr12:15711067..15711091 (25 bp)
TGCTCCACCTAACTCTGCAATAAAT
LOC_Os12g26820
Os.24831.4.S1_x_at--304--98926Chr10:9734755..9734779 (25 bp)
TACTCCAGGCCAAGCAAAGGGCAAT
LOC_Os10g20050
Target Sequence 
CTATTAGCAGCACCGAATGGCCTCCCGCAGGGATAACTATTCCCAGACGTCAAAGAGGAAATACCTTCCGAGGTGCCCGA
CAGTTGACCCAGCACCTTCTAAGCCATGGTGGCAGAGTATCTGATAGTGAAGGGTCAGATCAAGTCTCCTCGAATGATGA
AGATGAGTCTCCCCGACATCTCGGTGAGGAAGAGATGGAATCAAAAGCATGCACCCGTTGTGGAGAAATTGGACACGTTG
CTAGCATGTGTCTCACACTCTGCACTCATTGTGAAGAAGACCATCCACCAGGGGAGTGTCCCACCCGCAAGCTAGTCAGC
TCCAACAGCAACATCGACGATATCATCCACAACACCAATGCTCCTCCTGCTCCACCTAACTCTGCAATAAATCATAGCAA
TAATATCTTTAGCACCAACCATTCTCTGCACCGACAGCCTCAGCAAAGAATTGTCGTTGATGGAAGAAGTTGTGTCTCTC
CCCGACCTACTCCAGGCCAAGCAAAGGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24831.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis