Browse Element(s) Details


Os.24831.3.S1_s_at

Description gb:NM_184569.1
DB_XREF= gi:34896227
GEN=P0676G08.23
TID=Os.24831.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1014_G12.17 (OJ1014_G12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0676G08.23 (P0676G08.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1387011/11retrotransposon protein, putative, unclassified
LOC_Os06g1873011/11retrotransposon protein, putative, unclassified
LOC_Os04g0518011/11retrotransposon protein, putative, unclassified
LOC_Os12g1805011/11retrotransposon protein, putative, unclassified
LOC_Os08g4526011/11retrotransposon protein, putative, unclassified
LOC_Os04g2950011/11retrotransposon protein, putative, unclassified
LOC_Os06g3175011/11retrotransposon protein, putative, unclassified
LOC_Os12g2560011/11retrotransposon protein, putative, unclassified
LOC_Os02g1824011/11retrotransposon protein, putative, unclassified
LOC_Os12g1698011/11retrotransposon protein, putative, unclassified
LOC_Os10g2427011/11retrotransposon protein, putative, unclassified
LOC_Os02g2553011/11retrotransposon protein, putative, unclassified
LOC_Os05g1758011/11retrotransposon protein, putative, unclassified
LOC_Os12g1401011/11retrotransposon protein, putative, unclassified
LOC_Os10g1721011/11retrotransposon protein, putative, unclassified
LOC_Os02g2539011/11retrotransposon protein, putative, unclassified
LOC_Os05g3903011/11retrotransposon protein, putative, unclassified
LOC_Os08g1211011/11retrotransposon protein, putative, unclassified
LOC_Os01g2907011/11retrotransposon protein, putative, unclassified
LOC_Os03g3297010/11retrotransposon protein, putative, unclassified
LOC_Os12g1118010/11retrotransposon protein, putative, unclassified
LOC_Os01g4090010/11retrotransposon protein, putative, unclassified
LOC_Os06g3277010/11retrotransposon protein, putative, unclassified
LOC_Os05g1724010/11retrotransposon protein, putative, unclassified
LOC_Os08g2454010/11retrotransposon protein, putative, unclassified
LOC_Os05g1722010/11retrotransposon protein, putative, unclassified
LOC_Os05g1803010/11retrotransposon protein, putative, unclassified
LOC_Os01g2418010/11retrotransposon protein, putative, unclassified
LOC_Os04g0483010/11retrotransposon protein, putative, unclassified
LOC_Os06g3185010/11retrotransposon protein, putative, unclassified
LOC_Os05g1772010/11retrotransposon protein, putative, unclassified
LOC_Os04g1339010/11retrotransposon protein, putative, unclassified
LOC_Os10g0315010/11retrotransposon protein, putative, unclassified
LOC_Os04g1384010/11retrotransposon protein, putative, unclassified
LOC_Os04g3811010/11retrotransposon protein, putative, unclassified
LOC_Os09g091909/11retrotransposon protein, putative, unclassified
LOC_Os01g375707/11retrotransposon protein, putative, unclassified
LOC_Os10g115606/11retrotransposon protein, putative, unclassified
LOC_Os10g167806/11retrotransposon protein, putative, unclassified
LOC_Os07g478906/11retrotransposon protein, putative, unclassified
LOC_Os09g131406/11retrotransposon protein, putative, unclassified
LOC_Os07g149606/11retrotransposon protein, putative, unclassified
LOC_Os03g231406/11retrotransposon protein, putative, unclassified
LOC_Os07g258506/11retrotransposon protein, putative, unclassified
LOC_Os04g064026/11retrotransposon protein, putative, unclassified
LOC_Os11g351706/11retrotransposon protein, putative, unclassified
LOC_Os09g068705/11retrotransposon protein, putative, unclassified
LOC_Os04g194105/11retrotransposon protein, putative, unclassified
LOC_Os01g354005/11retrotransposon protein, putative, unclassified
LOC_Os04g052404/11retrotransposon protein, putative, unclassified
LOC_Os05g208004/11retrotransposon protein, putative, unclassified
LOC_Os05g194304/11retrotransposon protein, putative, unclassified
LOC_Os07g178803/11retrotransposon protein, putative, unclassified
LOC_Os12g268203/11retrotransposon protein, putative, unclassified
LOC_Os08g240801/11retrotransposon protein, putative, unclassified
LOC_Os09g090001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g177001/11retrotransposon protein, putative, unclassified
LOC_Os05g263001/11retrotransposon protein, putative, unclassified
LOC_Os12g176301/11retrotransposon protein, putative, unclassified
LOC_Os06g323901/11retrotransposon protein, putative, unclassified
LOC_Os04g140501/11retrotransposon protein, putative, unclassified
LOC_Os03g263291/11retrotransposon protein, putative, unclassified
LOC_Os09g090201/11retrotransposon protein, putative, unclassified
LOC_Os08g209521/11retrotransposon protein, putative, unclassified
LOC_Os07g247201/11retrotransposon protein, putative, unclassified
LOC_Os02g238281/11retrotransposon protein, putative, unclassified
LOC_Os09g045701/11retrotransposon protein, putative, unclassified
LOC_Os10g187301/11retrotransposon protein, putative, unclassified
LOC_Os03g265601/11retrotransposon protein, putative, unclassified
LOC_Os12g338001/11retrotransposon protein, putative, unclassified
LOC_Os03g232301/11retrotransposon protein, putative, unclassified
LOC_Os05g180601/11retrotransposon protein, putative, unclassified
LOC_Os12g255901/11retrotransposon protein, putative, unclassified
LOC_Os08g241001/11retrotransposon protein, putative, unclassified
LOC_Os08g229401/11retrotransposon protein, putative, unclassified
LOC_Os02g143401/11retrotransposon protein, putative, unclassified
LOC_Os12g289301/11retrotransposon protein, putative, unclassified
LOC_Os05g082701/11retrotransposon protein, putative, unclassified
LOC_Os05g520901/11hypothetical protein
LOC_Os05g228501/11retrotransposon protein, putative, unclassified
LOC_Os04g539001/11retrotransposon protein, putative, unclassified
LOC_Os08g273801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13820Os.53142.1.S1_at3/114+7688174..7694563retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13830NANA4+7696867..7697564retrotransposon protein, putative, unclassified
LOC_Os04g13840Os.24831.3.S1_s_at10/114+7698712..7700784retrotransposon protein, putative, unclassified
LOC_Os04g13840Os.24831.1.S1_x_at6/114+7698712..7700784retrotransposon protein, putative, unclassified
LOC_Os04g13840Os.24831.3.S1_x_at6/114+7698712..7700784retrotransposon protein, putative, unclassified
LOC_Os04g13840Os.24831.2.S1_at2/114+7698712..7700784retrotransposon protein, putative, unclassified
LOC_Os04g13840Os.24831.4.S1_x_at1/114+7698712..7700784retrotransposon protein, putative, unclassified
LOC_Os04g13850NANA4+7704649..7705940retrotransposon protein, putative, unclassified
LOC_Os04g13860NANA4+7707695..7710995retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13870Os.24831.3.S1_s_at11/114+7715183..7717999retrotransposon protein, putative, unclassified
LOC_Os04g13870Os.24831.1.S1_x_at7/114+7715183..7717999retrotransposon protein, putative, unclassified
LOC_Os04g13870Os.24831.3.S1_x_at5/114+7715183..7717999retrotransposon protein, putative, unclassified
LOC_Os04g13874NANA4+7720492..7722114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13880OsAffx.21779.2.S1_at6/114+7724400..7726622retrotransposon protein, putative, unclassified
LOC_Os04g13880OsAffx.21779.3.S1_at3/114+7724400..7726622retrotransposon protein, putative, unclassified
LOC_Os04g13890Os.10731.2.A1_at2/114+7730528..7735304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13890Os.52238.1.S1_at2/114+7730528..7735304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13890Os.49936.2.A1_at2/114+7730528..7735304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13890Os.33601.3.S1_x_at1/114+7730528..7735304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13890OsAffx.15708.1.S1_at1/114+7730528..7735304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13890Os.26999.1.A1_at1/114+7730528..7735304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13900OsAffx.22947.2.S1_x_at1/114+7741213..7743438retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24831.3.S1_s_at--1161--68969Chr12:20359217..20359241 (25 bp)
GTATCTGATAGTGAAGGGTCAGATC
LOC_Os12g33800
Os.24831.3.S1_s_at--1066--85356Chr12:9721548..9721572 (25 bp)
TGGAGAAATTGGACACGTTGCTAGC
LOC_Os12g16980
Os.24831.3.S1_s_at--1053--59749Chr12:9721550..9721574 (25 bp)
GAGAAATTGGACACGTTGCTAGCAT
LOC_Os12g16980
Os.24831.3.S1_s_at--249--56155Chr12:9721552..9721576 (25 bp)
GAAATTGGACACGTTGCTAGCATGT
LOC_Os12g16980
Os.24831.3.S1_s_at--28--22551Chr12:9721553..9721577 (25 bp)
AAATTGGACACGTTGCTAGCATGTG
LOC_Os12g16980
Os.24831.3.S1_s_at--854--31755Chr12:9721554..9721578 (25 bp)
AATTGGACACGTTGCTAGCATGTGT
LOC_Os12g16980
Os.24831.3.S1_s_at--1075--108552Chr12:9721556..9721580 (25 bp)
TTGGACACGTTGCTAGCATGTGTCT
LOC_Os12g16980
Os.24831.3.S1_s_at--196--81548Chr12:15710816..15710840 (25 bp)
GGACACGTTGCTAGCATGTGTCTCA
LOC_Os12g26820
Os.24831.3.S1_s_at--721--21748Chr12:9721560..9721584 (25 bp)
ACACGTTGCTAGCATGTGTCTCACA
LOC_Os12g16980
Os.24831.3.S1_s_at--927--33349Chr12:9721561..9721585 (25 bp)
CACGTTGCTAGCATGTGTCTCACAC
LOC_Os12g16980
Os.24831.3.S1_s_at--623--18948Chr12:9721562..9721586 (25 bp)
ACGTTGCTAGCATGTGTCTCACACT
LOC_Os12g16980
Target Sequence 
GTATCTGATAGTGAAGGGTCAGATCAAGTCTCCTCGGATGATGAAGATGAGTCTCCCCGACATCTCGGCGAGGAAGAAAT
GGAATCAAAGGCATGCACCCGTTGTGGAGAAATTGGACACGTTGCTAGCATGTGTCTCACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24831.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis