Browse Element(s) Details


Os.49936.2.A1_at

Description gb:AK109178.1
DB_XREF= gi:32994387
TID=Os.49936.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A01, full insert sequence.
FL= gb:AK109178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g312503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g028103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g263293/11retrotransposon protein, putative, unclassified
LOC_Os01g478703/11hypothetical protein
LOC_Os12g054503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g073703/11retrotransposon protein, putative, unclassified
LOC_Os11g220103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g138902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g149202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g199242/11tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os08g241202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g151301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g086301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g268101/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g175301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g147601/11hypothetical protein
LOC_Os03g386201/11hypothetical protein
LOC_Os03g407601/11hypothetical protein
LOC_Os07g260201/11hypothetical protein
LOC_Os04g453901/11transposon protein, putative, unclassified
LOC_Os07g264101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g213001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g342901/11retrotransposon protein, putative, unclassified
LOC_Os03g638701/11expressed protein
LOC_Os11g080601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31210NANA3+17729241..17731146UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g31230Os.7405.1.S1_at11/113+17735318..17739005Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g31240Os.54553.1.S1_at11/113+17742233..17744024Zinc finger, C2H2 type family protein, expressed
LOC_Os03g31250Os.49936.2.A1_at3/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250Os.50457.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250OsAffx.22945.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0006260biological_processDNA replication
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49936.2.A1_at--1069--231381Chr12:1446889..1446913 (25 bp)
AAAGAGGCCGTGACAGGACCCTTCG
NONE
Os.49936.2.A1_at--722--913341Chr12:1446993..1447017 (25 bp)
TGCCTAGGTGAATCCGGAAGCGACA
NONE
Os.49936.2.A1_at--1039--183384Chr12:371056..371080 (25 bp)
ACGCTGGCTTGTGGTAAGTACGATA
NONE
Os.49936.2.A1_at--664--283370Chr12:371071..371095 (25 bp)
AAGTACGATAAGTTCTTCCAGGGCA
NONE
Os.49936.2.A1_at--860--4357Chr07:21032575..21032878 (25 bp)
CCACAGCCCACCATGTAGTTTATTT
NONE
Os.49936.2.A1_at--1040--23185Chr12:5176075..5176098 (24 bp)
AAAGCGGTGGCACTAATCCAACAGA
NONE
Os.49936.2.A1_at--383--34921Chr08:13709599..13709618 (20 bp)
CATTGGAACCAACAGTCTAAACATT
NONE
Os.49936.2.A1_at--110--171Chr07:21337123..21337147 (25 bp)
ATTATTATGCTTTTCCCCATTGTGA
NONE
Os.49936.2.A1_at--640--48918Chr12:15020786..15020808 (23 bp)
GCTTTTCCCCATTGTGAACTAGTTG
NONE
Os.49936.2.A1_at--554--4993Chr10:11287459..11287572 (25 bp)
GCATGTCTAAGCAATTCCTAGTCCA
NONE
Os.49936.2.A1_at--726--6733Chr11:14681991..14682214 (25 bp)
GTTATACCCCAAGCTAACAAGGGAG
NONE
Target Sequence 
AAAGAGGCCGTGACAGGACCCTTCGCATAACCCCTCTCTAGCCAAGCACACCACACCTCAGGTTTCACCCCCGTCCCCAG
CGGGCCACGGGCAGTCCCCTCTCGTGCCTAGGTGAATCCGGAAGCGACAGAGGCCGTCGCAGGGCCCGCCCCGCTCCATC
ACGCCCACCCTTGCCTGGATGCGTCGACTAGAGGAAAGCTACACTACAAGCCCAGCCGTTGCCCACGCTGGCTTGTGGTA
AGTACGATAAGTTCTTCCAGGGCATCCCGCGAACCGGTCCTTAACTGCCATGGGTGCGACCAGCAAAACCATGCACCCAC
AGCCCACCATGTAGTTTATTTTAATTAACCCACGCCAAAGCGGTGGCACTAATCCAACAGAACCATTGGAACCAACAGTC
TAAACATTATTATGCTTTTCCCCATTGTGAACTAGTTGAACTAAGCATGTCTAAGCAATTCCTAGTCCAAACTCTAATCA
TGTTATACCCCAAGCTAACAAGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49936.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis