Browse Element(s) Details


OsAffx.25313.1.S1_at

Description tigr:9631.m03071
TID=OsAffx.25313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3126010/11serine/threonine-protein kinase receptor precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31230Os.7405.1.S1_at11/113+17735318..17739005Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g31240Os.54553.1.S1_at11/113+17742233..17744024Zinc finger, C2H2 type family protein, expressed
LOC_Os03g31250Os.49936.2.A1_at3/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250Os.50457.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250OsAffx.22945.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25313.1.S1_at--878--5171Chr03:17760732..17760756 (25 bp)
GACTTTGGCACGACTAAACCACTTG
LOC_Os03g31260
OsAffx.25313.1.S1_at--982--6231Chr03:17760702..17760726 (25 bp)
GATGGCACTGGAACTCAGACTATAG
LOC_Os03g31260
OsAffx.25313.1.S1_at--424--291NONE
ATAGTTTTTTCACCTGCACATCACA
NONE
OsAffx.25313.1.S1_at--853--5371Chr03:17760213..17760237 (25 bp)
GAAGAACACTCTTAGGCCAAGCCTC
LOC_Os03g31260
OsAffx.25313.1.S1_at--287--5951Chr03:17759805..17759829 (25 bp)
GAGCACAGGATCATGGACCTCGTTG
LOC_Os03g31260
OsAffx.25313.1.S1_at--642--5831Chr03:17759790..17759814 (25 bp)
GACCTCGTTGATCCGTCAATGGTGA
LOC_Os03g31260
OsAffx.25313.1.S1_at--1139--7071Chr03:17759776..17759800 (25 bp)
GTCAATGGTGAGACGCTGCTCTGGA
LOC_Os03g31260
OsAffx.25313.1.S1_at--37--9151Chr03:17759729..17759753 (25 bp)
TGCGTAGGTGCATCCAGATCGGGCT
LOC_Os03g31260
OsAffx.25313.1.S1_at--736--1271Chr03:17759714..17759738 (25 bp)
AGATCGGGCTCCTCTGCGTACAGGA
LOC_Os03g31260
OsAffx.25313.1.S1_at--988--8951Chr03:17759680..17759704 (25 bp)
TGACAGGCCGACCATGTCCCAGGTT
LOC_Os03g31260
OsAffx.25313.1.S1_at--854--5711Chr03:17759634..17759658 (25 bp)
GACTCCTCATGGCTGAACAAGCCTA
LOC_Os03g31260
Target Sequence 
GACTTTGGCACGACTAAACCACTTGTTGCTGATGGCACTGGAACTCAGACTATAGTTTTTTCACCTGCACATCACAGAGG
TTATGCAGCTCCTGAGTACATCCGAGGGGATGTGACATTGAAGTGCGATGTGTATAGCTTCGGAGTTGTGCTACTAGAGA
TAATCAGTGGGCAGAAGAACACTCTTAGGCCAAGCCTCCTTTCAAAGGCCTGGAAACTGTGGGACGAGCACAGGATCATG
GACCTCGTTGATCCGTCAATGGTGAGACGCTGCTCTGGAGCGGAGGGGCTCCAATCGCACGTGCGTAGGTGCATCCAGAT
CGGGCTCCTCTGCGTACAGGACTCGCCCTGTGACAGGCCGACCATGTCCCAGGTTCTGGCGATGCTCACCGGCGACGACT
CCTCATGGCTGAACAAGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis