Browse Element(s) Details


Os.50457.1.S1_at

Description gb:AK066447.1
DB_XREF= gi:32976465
TID=Os.50457.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065D03, full insert sequence.
FL= gb:AK066447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g312501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31210NANA3+17729241..17731146UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os03g31230Os.7405.1.S1_at11/113+17735318..17739005Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g31240Os.54553.1.S1_at11/113+17742233..17744024Zinc finger, C2H2 type family protein, expressed
LOC_Os03g31250Os.49936.2.A1_at3/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250Os.50457.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250OsAffx.22945.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50457.1.S1_at--304--7171Chr02:7089360..7089384 (25 bp)
GTCTCCCAGATCTACACCGGAGAGG
NONE
Os.50457.1.S1_at--1131--9251Chr02:7089246..7089270 (25 bp)
TCCTCGCCCCTGGAGAGAGGAACGT
NONE
Os.50457.1.S1_at--565--6011Chr02:7089232..7089256 (25 bp)
GAGAGGAACGTCGAACACCGCCGTG
NONE
Os.50457.1.S1_at--808--2331Chr02:7089078..7089102 (25 bp)
AAAGACTGGTGGGACCCACTCAAAG
NONE
Os.50457.1.S1_at--674--5811Chr02:7089066..7089090 (25 bp)
GACCCACTCAAAGGAATATGCACCG
NONE
Os.50457.1.S1_at--524--5091Chr02:7089047..7089071 (25 bp)
GCACCGTGGAGCATGTATCTAACAA
NONE
Os.50457.1.S1_at--283--9832Chr03:17749767..17749790 (24 bp)
TAACAATGTTCTTGGGTGTTCTTGA
LOC_Os03g31250
Os.50457.1.S1_at--794--6731Chr02:7089011..7089035 (25 bp)
GTTCTTGAGCTAAGTTGGCACACGA
NONE
Os.50457.1.S1_at--450--8511Chr02:7088996..7089020 (25 bp)
TGGCACACGAGGCTCCACAAATATT
NONE
Os.50457.1.S1_at--758--2251Chr02:7088978..7089002 (25 bp)
AAATATTTGTGACCCACTGCTAATA
NONE
Os.50457.1.S1_at--115--5811Chr02:7088968..7088992 (25 bp)
GACCCACTGCTAATACCCTAAGAGA
NONE
Target Sequence 
GTCTCCCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGA
GCGGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCT
GCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGA
TAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGT
GGAGCATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCACAAATATTTGTGACCCACT
GCTAATACCCTAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis