Browse Element(s) Details


OsAffx.25315.1.S1_at

Description tigr:9631.m03073
TID=OsAffx.25315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3128011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31250Os.49936.2.A1_at3/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250Os.50457.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31250OsAffx.22945.1.S1_at1/113+17747310..17750642retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31254OsAffx.4929.1.S1_at1/113+17757335..17757637hypothetical protein
LOC_Os03g31260OsAffx.25313.1.S1_at10/113+17759596..17760867serine/threonine-protein kinase receptor precursor, putative
LOC_Os03g31270OsAffx.25314.1.S1_at11/113+17766495..17768110hypothetical protein
LOC_Os03g31270OsAffx.32036.1.S1_at4/113+17766495..17768110hypothetical protein
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed
LOC_Os03g31310Os.11688.1.S1_at11/113+17794911..17799265circadian clock coupling factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25315.1.S1_at--1149--9251Chr03:17774195..17774219 (25 bp)
TCCTCGATCAGAACCGCCGGCGATG
LOC_Os03g31280
OsAffx.25315.1.S1_at--346--10551Chr03:17774042..17774066 (25 bp)
TTCTTGTTCCCCAATAATCTCCGGC
LOC_Os03g31280
OsAffx.25315.1.S1_at--260--3091Chr03:17774030..17774054 (25 bp)
AATAATCTCCGGCTTCTCCGCGGCT
LOC_Os03g31280
OsAffx.25315.1.S1_at--30--4911Chr03:17774008..17774032 (25 bp)
GCTTCCCGGCGGTGCAAGAGTTGCA
LOC_Os03g31280
OsAffx.25315.1.S1_at--391--1351Chr03:17773992..17774016 (25 bp)
AGAGTTGCACGCGAACAAGGGCAGC
LOC_Os03g31280
OsAffx.25315.1.S1_at--671--7571Chr03:17773944..17773968 (25 bp)
GGGCTCGAGCATCCCTTGGTGGGAG
LOC_Os03g31280
OsAffx.25315.1.S1_at--445--9911Chr03:17773856..17773880 (25 bp)
TACTGCGGGTCGTTCTGCAGCAGGA
LOC_Os03g31280
OsAffx.25315.1.S1_at--326--3411Chr03:17773839..17773863 (25 bp)
CAGCAGGAGGATTCATGGAGCCGAC
LOC_Os03g31280
OsAffx.25315.1.S1_at--463--1451Chr03:17773786..17773810 (25 bp)
AGAAGCTTCGCGTGCTGCGCTACGA
LOC_Os03g31280
OsAffx.25315.1.S1_at--156--1531Chr03:17773243..17773744 (25 bp)
AGCAGTGCAGGCTGAGGTTGTACCC
LOC_Os03g31280
OsAffx.25315.1.S1_at--340--7331Chr03:17773239..17773740 (25 bp)
GTGCAGGCTGAGGTTGTACCCGTCT
LOC_Os03g31280
Target Sequence 
TCCTCGATCAGAACCGCCGGCGATGTGACGGCGATCGCCGCCGTCGGCAGCGAAGAAGAAGAAGAACACGCCGTGGCGAT
CACTGCGAGCGGCCCGTCGTCACCGTCGACACCGCTGCCGGTCGCGATGGGCGGCGCCATGGCCGGCTTCGGGTTCTTGT
TCCCCAATAATCTCCGGCTTCTCCGCGGCTTCCCGGCGGTGCAAGAGTTGCACGCGAACAAGGGCAGCGGCGGCGGCGGT
GTGGCGGTCTGGGGCTCGAGCATCCCTTGGTGGGAGTGGGACAACCCCGCCGCGCCTTCCGCGCTCCGAGCCGCGCTCTG
CCGCCTTTACGCCGAGGCGTACTGCGGGTCGTTCTGCAGCAGGAGGATTCATGGAGCCGACGCGGTGGAGGAGGAGAAGG
AGAAGAAGAAGAAGCTTCGCGTGCTGCGCTACGACGCCAACGCGGCCGTGGGCGGCGACGACGACGACGAGCTGCAGCAG
TGCAGGCTGAGGTTGTACCCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis