Browse Element(s) Details


OsAffx.32036.1.S1_at

Description tigr:9640.m03435
TID=OsAffx.32036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g355209/11hypothetical protein
LOC_Os03g312704/11hypothetical protein
LOC_Os07g244692/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g177002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g311702/11transposon protein, putative, unclassified
LOC_Os07g139602/11hypothetical protein
LOC_Os07g245492/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g022201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g260401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g035301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g085641/11expressed protein
LOC_Os07g071101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g170001/11transposon protein, putative, unclassified
LOC_Os08g110901/11retrotransposon protein, putative, unclassified
LOC_Os10g064401/11transposon protein, putative, unclassified
LOC_Os12g172601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g062401/11transposon protein, putative, unclassified
LOC_Os03g230601/11transposon protein, putative, unclassified
LOC_Os09g035601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g161401/11transposon protein, putative, unclassified
LOC_Os11g238601/11hypothetical protein
LOC_Os01g232101/11retrotransposon protein, putative, unclassified
LOC_Os01g190101/11transposon protein, putative, unclassified
LOC_Os03g010601/11retrotransposon protein, putative, unclassified
LOC_Os08g109401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g115401/11transposon protein, putative, unclassified
LOC_Os11g185101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g119101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g110001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g119401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g122001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g238201/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35480Os.49115.1.S1_at11/1112+21540718..21543285expressed protein
LOC_Os12g35490OsAffx.7800.1.S1_at11/1112+21544805..21547341hypothetical protein
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32036.1.S1_at--751--3252Chr12:21566839..21566863 (25 bp)
CAACCCCTCAGTACAGCTCAAGGGT
LOC_Os12g35520
OsAffx.32036.1.S1_at--518--4272Chr12:21566834..21566858 (25 bp)
CCTCAGTACAGCTCAAGGGTTGACT
LOC_Os12g35520
OsAffx.32036.1.S1_at--973--1571Chr12:21566825..21566849 (25 bp)
AGCTCAAGGGTTGACTGACCTGTCC
LOC_Os12g35520
OsAffx.32036.1.S1_at--144--3211Chr12:21566821..21566845 (25 bp)
CAAGGGTTGACTGACCTGTCCGGCG
LOC_Os12g35520
OsAffx.32036.1.S1_at--885--8931Chr12:21566814..21566838 (25 bp)
TGACTGACCTGTCCGGCGGTCCAGA
LOC_Os12g35520
OsAffx.32036.1.S1_at--87--8712Chr12:21566805..21566829 (25 bp)
TGTCCGGCGGTCCAGAAGAATCGAA
LOC_Os12g35520
OsAffx.32036.1.S1_at--1013--8352Chr12:21566800..21566824 (25 bp)
GGCGGTCCAGAAGAATCGAAGGCAA
LOC_Os12g35520
OsAffx.32036.1.S1_at--1006--5251NONE
GAATCGAAGGCAAGCTTGCCCATAA
NONE
OsAffx.32036.1.S1_at--144--5291Chr11:15230366..15230842 (25 bp)
GAAGGCAAGCTTGCCCATAACCGAG
NONE
OsAffx.32036.1.S1_at--709--321381Chr12:4259753..4259774 (22 bp)
CAAGCTTGCCCATAACCGAGGGCGT
NONE
OsAffx.32036.1.S1_at--438--15526Chr12:4259753..4259776 (24 bp)
AGCTTGCCCATAACCGAGGGCGTGG
NONE
Target Sequence 
CAACCCCTCAGTACAGCTCAAGGGTTGACTGACCTGTCCGGCGGTCCAGAAGAATCGAAGGCAAGCTTGCCCATAACCGA
GGGCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis